Protein Concepts Dictionary

Tableau information

Concept source:  d1gloa_  amino acid (a.a.) range (PHE70)(ALA199)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: HEEEHEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PHE70)   (LYS82) H1
	   (LYS82)   (ASP87) E2
	  (ALA107)  (LYS112) E3
	  (LYS112)  (LEU116) E4
	  (GLU121)  (GLY132) H5
	  (GLY132)  (HIS142) E6
	  (HIS142)  (TYR148) H7
	  (HIS164)  (VAL169) E8
	  (VAL169)  (ASP173) E9
	  (LEU181)  (SER185) E10
	  (GLY194)  (ALA199) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                           
E2      110.4°   E2                                                                    
E3     -110.6°  138.2°   E3                                                             
E4     -166.3°   77.9°   60.3°   E4                                                      
H5       34.1°  -79.4°  136.4° -145.8°   H5                                               
E6      141.5°   63.4°  -88.8°  -51.6° -134.4°   E6                                        
H7      -58.5°  -61.0°  141.0°  120.9°  -25.0° -123.7°   H7                                 
E8      -71.0°  -90.0°   95.7°   98.8°  -55.8°  142.1°   45.7°   E8                          
E9     -145.9°   72.9°   68.7°   24.3° -123.0°   71.6°   99.4°   75.1°   E9                   
E10      70.0°   78.4° -123.9° -123.2°   76.0°  -71.6°  -89.4°  131.8°  140.6°   E10           
E11    -124.7° -119.2°   21.6°   43.5° -138.4°   85.1°  129.9°  -85.6°  -47.4°  140.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1gloa_ :    (PHE70)  (ALA199)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin S |Human (Homo sapiens) [TaxId: 9606]
 d4mzoa_ :   (TYR193)  (ASN324)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3of8a_ :    (MET71)  (ASP205)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2f7da1 :    (MET68)  (ASN192)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d2nqdb_ :    (LEU69)  (ASP204)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1vsna1 :    (MET68)  (ASN192)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
 d4bpva_ :   (TYR193)  (ASN324)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1snka_ :    (MET68)  (ASN199)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
 d1yk8a_ :   (TYR181)  (ALA311)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
 d3ioqa_ :    (PRO68)  (GLY192)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Carica candamarcensis [TaxId: 35926]
 d1fh0a_ :    (PHE69)  (ALA202)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin V |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.3