Protein Concepts Dictionary

Tableau information

Concept source:  d1uipa_  amino acid (a.a.) range (LYS9)(LYS171)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHHHHHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS9)   (LEU14) E1
	   (LYS23)   (GLY35) H2
	   (THR42)   (ILE49) H3
	   (SER57)   (MET69) H4
	   (MET69)   (CYS75) H5
	   (CYS75)   (GLY94) H6
	   (TYR97)  (SER103) E7
	  (SER103)  (ALA108) H8
	  (THR125)  (ALA143) H9
	  (LYS147)  (LEU152) E10
	  (PRO159)  (LYS171) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      -50.1°   H2                                                                    
H3       55.5°  105.0°   H3                                                             
H4      -96.3°   50.3°  149.9°   H4                                                      
H5      -77.9°   71.2° -102.8°  -56.4°   H5                                               
H6      140.5°  168.8°  -85.1°  121.4° -111.7°   H6                                        
E7       31.2°  -35.5°   74.9°  -85.2°  -95.7°  149.1°   E7                                 
H8       80.0°   31.9°  130.6°  -37.7°  -85.8°  137.0°   55.8°   H8                          
H9     -170.0°  134.5° -120.4°   85.5°   95.1°  -36.0°  158.6°  106.8°   H9                   
E10      22.1°  -54.9°   53.1° -105.2°  -99.6°  132.7°  -21.8°  -77.6°  164.9°   E10           
H11    -126.2°  109.1° -120.6°   64.9°   49.2°  -68.4°  142.3°  101.9°  -46.0°  148.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1uioa_ :     (LYS9)  (LYS171)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d3iara_ :     (LYS9)  (TYR172)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Human (Homo sapiens) [TaxId: 9606]
 d1w1ie_ :     (LYS9)  (LYS171)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Cow (Bos taurus) [TaxId: 9913]
 d1fkxa_ :     (LYS9)  (TYR172)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d1uipa_ :     (LYS9)  (LYS171)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d1a4la_ :     (LYS9)  (ASN173)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d1fkwa_ :     (LYS9)  (LYS171)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1