Protein Concepts Dictionary

Tableau information

Concept source:  d1v8of_  amino acid (a.a.) range (GLU4)(LYS116)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHHEHHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLU4)    (ALA9) E1
	    (ALA9)   (LEU15) H2
	   (TRP22)   (ARG26) H3
	   (LYS28)   (LEU32) E4
	   (LEU32)   (GLY50) H5
	   (ASP53)   (LYS69) H6
	   (LYS69)   (PRO75) E7
	   (PRO75)   (GLU85) H8
	   (THR89)  (GLY103) H9
	  (GLY103)  (GLN109) E10
	  (ASP110)  (LYS116) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      -91.8°   H2                                                                    
H3     -106.1° -126.7°   H3                                                             
E4      -45.0° -134.1°  -68.1°   E4                                                      
H5       28.9°  -64.9° -130.3°   73.9°   H5                                               
H6     -162.5°  105.7°   64.2° -118.4°  165.3°   H6                                        
E7      -78.8° -167.9°   64.0°  -40.1° -104.2°   83.7°   E7                                 
H8      -70.8°   89.8°  143.3°  -88.8°  -62.7°  107.5°  -79.9°   H8                          
H9      170.3°  -78.7°   78.8°  143.4° -142.5°   27.2°  110.9°  110.5°   H9                   
E10     -29.1°   67.9° -133.6°  -73.3°    6.2°  161.8° -100.7°  -56.7° -143.4°   E10           
H11     150.1° -117.0°   64.3°  108.5°  162.2°  -13.3°   71.6°   99.5°  -39.6° -156.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1v8pf_ :     (GLU4)  (LYS116)   [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
 d1v8of_ :     (GLU4)  (LYS116)   [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
 d1v8pc_ :     (GLU4)  (LYS116)   [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
 d1v8oa_ :     (GLU4)  (LYS116)   [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
 d1v8oc_ :     (GLU4)  (LYS116)   [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]
 d1v8ob_ :     (GLU4)  (LYS116)   [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein PAE2754 |Pyrobaculum aerophilum [TaxId: 13773]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.120