Protein Concepts Dictionary

Tableau information

Concept source:  d3eica_  amino acid (a.a.) range (THR4)(TRP127)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHHEHHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR4)    (ILE8) E1
	   (PRO10)   (ARG15) H2
	   (LEU17)   (ASN29) H3
	   (VAL33)   (SER39) E4
	   (ARG43)   (TYR50) H5
	   (TYR58)   (SER68) H6
	   (GLY69)   (VAL75) E7
	   (ASP80)   (GLY90) H8
	   (THR97)  (LEU102) H9
	  (ILE111)  (SER116) E10
	  (SER116)  (TRP127) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      -46.7°   H2                                                                    
H3      156.3°  110.2°   H3                                                             
E4      -26.5°  -73.1°  175.3°   E4                                                      
H5     -130.5° -114.5°   46.8° -129.1°   H5                                               
H6       73.1°   48.8°  -95.2°  -89.4°  135.2°   H6                                        
E7      161.9°  115.5°  -10.3°  169.7°   54.1°  -92.5°   E7                                 
H8       29.2°   49.4°  136.4°  -43.2° -101.3°   92.7°  146.6°   H8                          
H9        9.8°   45.2°  150.6°  -31.0° -120.8°   78.8°  159.1°  -19.5°   H9                   
E10     160.7° -150.4°  -40.7°  135.5°   45.9° -124.0°  -37.2° -141.6° -157.1°   E10           
H11      58.5°  -75.5° -128.2°   55.4°  169.5°  -48.5° -119.6°   87.7°   68.2° -123.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1s57b_ :    (THR86)  (LEU211)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]
 d3fbbb_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d2hvda_ :     (GLU5)  (PHE134)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Human (Homo sapiens), NDKA [TaxId: 9606]
 d3l7ub_ :     (GLU5)  (TRP133)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Human (Homo sapiens), NDKA [TaxId: 9606]
 d3evwb_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3eica_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3js9a_ :     (GLU2)  (PHE131)   [view usage] : d.58.6.0 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |automated matches |automated matches |Babesia bovis [TaxId: 484906]
 d1leoa_ :    (THR11)  (PHE138)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
 d3evwf_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3fbff_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3b6bb_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3fc9a_ :     (THR4)  (TRP131)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d2b8pb1 :     (GLN2)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Mimivirus [TaxId: 315393]
 d3fcwb_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3fbbf_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3fbfc_ :     (THR4)  (PRO129)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3eicb_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d4kpcb_ :     (THR6)  (TRP132)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Leishmania braziliensis [TaxId: 5660]
 d3fcwa_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3b6ba_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3fbcf_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3b6bc_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3gpaa_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3b6bf_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3fbba_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]
 d3fbbc_ :     (THR4)  (TRP127)   [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Acanthamoeba polyphaga mimivirus [TaxId: 212035]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.58