Protein Concepts Dictionary

Tableau information

Concept source:  d4exlc_  amino acid (a.a.) range (ASP121)(MET237)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP121)  (THR124) E1
	  (THR124)  (GLY134) H2
	  (GLY134)  (TRP139) H3
	  (PRO148)  (ARG154) E4
	  (GLY159)  (MET169) H5
	  (SER177)  (SER182) E6
	  (SER182)  (SER193) H7
	  (GLY195)  (TYR199) E8
	  (SER208)  (LEU214) E9
	  (PRO221)  (ASN227) H10
	  (LEU231)  (MET237) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      108.5°   H2                                                                    
H3      142.6° -106.4°   H3                                                             
E4      -69.9°  -89.1°  123.7°   E4                                                      
H5       55.1° -121.4°   95.1° -122.4°   H5                                               
E6     -108.2° -104.5°   74.9°  -48.8°  133.9°   E6                                        
H7      112.2°   92.1°  -53.3° -177.0°  -59.0°  128.2°   H7                                 
E8      -59.2° -106.2°  121.8°  -18.2°  106.8°  -51.0° -161.4°   E8                          
E9      -21.0° -121.3°  123.3°  -87.8°   35.1° -116.2°   93.9°  -73.9°   E9                   
H10      21.8°  -86.7°  160.7°  -69.4°   65.7° -116.2°  113.4°  -65.5°   38.4°   H10           
E11     -83.6°  -82.5° -113.9°   13.8°  136.1°  -40.7° -164.2°   29.8° -101.6°  -81.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4exlc_ :   (ASP121)  (MET237)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
 d4exla_ :   (ASP121)  (MET237)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
 d4exlb_ :   (ASP121)  (MET237)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
 d4exld_ :   (ASP121)  (MET237)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
 d4lata_ :   (VAL101)  (MET237)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94