Protein Concepts Dictionary

Tableau information

Concept source:  d1w9xa2  amino acid (a.a.) range (ASN6)(ARG158)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASN6)   (GLN11) E1
	   (HIS23)   (ASP30) H2
	   (ASP30)   (GLY38) H3
	   (THR40)   (PRO45) E4
	   (THR81)   (GLY96) H5
	   (GLY96)  (ASN106) E6
	  (ASN106)  (GLY110) E7
	  (ALA113)  (LEU118) E8
	  (LEU118)  (ASN123) E9
	  (THR141)  (PHE145) E10
	  (ASP154)  (ARG158) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      163.1°   H2                                                                    
H3      141.7°  -47.8°   H3                                                             
E4      -16.2°  177.7°  131.0°   E4                                                      
H5      167.9°   14.8°  -33.1° -164.1°   H5                                               
E6      -43.9°  151.8°  105.4°  -28.0° -137.4°   E6                                        
E7       33.2° -131.5°  159.8°   48.6°  144.8°   76.6°   E7                                 
E8      -88.7°  106.5°  -62.1°  -73.3°  -92.4°  -45.3° -121.8°   E8                          
E9     -113.4°   63.5°   41.6° -114.2°   55.1° -103.8° -118.2°  -80.1°   E9                   
E10     100.7°  -68.2° -116.0°  113.0°  -82.9° -136.9°   69.0°  156.4°  114.8°   E10           
E11     -63.0°  124.1°   78.7°  -54.2°  110.6°   38.6°  -92.2°  -42.8°  -65.4° -159.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1e3xa2 :     (ASN2)  (TRP155)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
 d1w9xa2 :     (ASN6)  (ARG158)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus halmapalus [TaxId: 79882]
 d1ud3a2 :     (ASN4)  (TRP157)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus sp., ksm-k38 [TaxId: 1409]
 d1hvxa2 :     (ASN5)  (TRP158)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus stearothermophilus [TaxId: 1422]
 d1ob0a2 :     (ASN4)  (TRP157)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus licheniformis [TaxId: 1402]
 d1blia2 :     (ASN4)  (TRP157)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus licheniformis [TaxId: 1402]
 d2gjpa2 :     (ASN6)  (ARG158)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus halmapalus [TaxId: 79882]
 d2diea1 :     (ASN6)  (TRP159)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus sp.
 d1ud2a2 :     (ASN4)  (ARG156)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Bacillus sp., ksm-k38 [TaxId: 1409]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1