Protein Concepts Dictionary

Tableau information

Concept source:  d1cyea_  amino acid (a.a.) range (LEU6)(GLY128)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LEU6)   (ASP12) E1
	   (SER15)   (GLY29) H2
	   (ASN32)   (GLU37) E3
	   (GLY39)   (GLY49) H4
	   (GLY52)   (ASP57) E5
	   (ASP64)   (ALA74) H6
	   (GLY76)   (PRO82) H7
	   (PRO82)   (ALA88) E8
	   (LYS91)  (GLY102) H9
	  (SER104)  (PRO110) E10
	  (THR112)  (GLY128) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      160.8°   H2                                                                    
E3      -19.2°  168.7°   E3                                                             
H4      164.8°  -34.1°  148.9°   H4                                                      
E5      -19.3°  141.5°  -36.9°  173.3°   E5                                               
H6      143.4°  -54.5°  124.5°  -26.6°  160.1°   H6                                        
H7      -93.7°   67.1° -110.1°  100.6°  -74.5° -120.3°   H7                                 
E8      -27.5°  134.3°  -46.5°  161.7°  -11.7° -170.9°  -67.9°   E8                          
H9      135.5°  -63.7°  118.4°  -30.5°  154.8°   15.4° -130.7°  159.6°   H9                   
E10     -50.8°  115.9°  -69.4°  133.6°  -40.1°  157.0°   60.9°  -28.5°  145.2°   E10           
H11     124.5°  -68.5°  106.0°  -51.1°  135.3°  -27.1°  121.0°  146.9°  -37.8°  175.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1jlkb_ :     (LYS9)  (THR141)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Response regulator for cyanobacterial phytochrome |Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
 d2jb9a_ :     (ARG3)  (ILE123)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |automated matches |Escherichia coli [TaxId: 562]
 d3grca_ :   (PRO548)  (ALA670)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Polaromonas sp. [TaxId: 296591]
 d2qvga_ :     (ASP9)  (MSE135)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
 d2nt3a_ :     (SER2)  (LEU119)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Myxococcus xanthus [TaxId: 34]
 d3hdvd_ :    (PRO69)  (GLU185)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
 d1w25a1 :     (ARG4)  (ALA134)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Response regulator PleD, receiver domain |Caulobacter crescentus [TaxId: 155892]
 d1jlka_ :     (LYS9)  (VAL142)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Response regulator for cyanobacterial phytochrome |Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
 d1p6qa_ :     (LYS8)  (PHE125)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |CheY protein |Sinorhizobium meliloti, CheY2 [TaxId: 382]
 d3hdva_ :    (ARG68)  (LYS187)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
 d3heba_ :     (VAL8)  (MSE142)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 269796]
 d1cyea_ :     (LEU6)  (GLY128)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |CheY protein |Escherichia coli [TaxId: 562]
 d3t6ka_ :     (HIS4)  (ARG123)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Chloroflexus aurantiacus [TaxId: 324602]
 d1b00a_ :     (ARG4)  (ARG122)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |PhoB receiver domain |Escherichia coli [TaxId: 562]
 d1w25a2 :   (GLY154)  (ASN280)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |Response regulator PleD, receiver domain |Caulobacter crescentus [TaxId: 155892]
 d2jbaa_ :     (ARG4)  (ARG122)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |automated matches |Escherichia coli [TaxId: 562]
 d1ymua_ :     (LEU6)  (LEU127)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |CheY protein |Escherichia coli [TaxId: 562]
 d2iynb_ :     (ARG3)  (SER124)   [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |automated matches |Escherichia coli [TaxId: 562]
 d3hdvb_ :    (ARG68)  (LYS187)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
 d3hdvc_ :    (PRO69)  (GLU185)   [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.23