Protein Concepts Dictionary

Tableau information

Concept source:  d2hjra1  amino acid (a.a.) range (LYS15)(LYS144)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS15)   (GLY21) E1
	   (ILE25)   (ASP37) H2
	   (ASP40)   (ILE46) E3
	   (ILE47)   (LEU64) H4
	   (PRO68)   (GLU74) E5
	   (ASN76)   (GLN81) H6
	   (ASP84)   (ILE88) E7
	   (THR99)  (THR105) H8
	  (THR105)  (TYR121) H9
	  (PHE126)  (ILE130) E10
	  (LEU134)  (LYS144) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2     -164.9°   H2                                                                    
E3      -19.9° -170.6°   E3                                                             
H4      137.4°  -28.8°  156.9°   H4                                                      
E5      -37.8°  154.7°  -17.9° -172.7°   E5                                               
H6     -149.9°   34.5° -151.5°   43.7° -143.5°   H6                                        
E7      -13.0°  154.6°  -32.2°  125.9°  -50.0° -139.8°   E7                                 
H8       91.1°  -97.8°   73.4° -123.1°   57.5° -111.1°  104.1°   H8                          
H9      151.1°  -39.3°  132.7°  -67.8°  115.4°  -55.2°  164.0°  -60.0°   H9                   
E10     -30.5°  135.3°  -50.3°  106.9°  -68.2°  131.6°  -19.7°  117.2°  164.5°   E10           
H11     114.4°  -77.5°   95.0° -106.0°   77.3°  -84.4°  127.1°  -27.0°  -38.2°  143.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4kqxb1 :    (LEU28)  (GLY125)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Slackia exigua [TaxId: 649764]
 d1ldga1 :    (ALA21)  (HIS152)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d1emda1 :     (MET1)  (GLY136)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Escherichia coli [TaxId: 562]
 d1enya_ :     (ARG9)  (MET161)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
 d2hjra1 :    (LYS15)  (LYS144)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cryptosporidium parvum [TaxId: 5807]
 d1z7ea2 :   (THR316)  (GLY437)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Polymyxin resistance protein ArnA (PrmI) |Escherichia coli [TaxId: 562]
 d1pzfa1 :    (LYS21)  (ALA152)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Toxoplasma gondii [TaxId: 5811]
 d2a92a1 :    (PRO21)  (GLU151)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Plasmodium vivax [TaxId: 5855]
 d1mlda1 :     (ALA1)  (GLY135)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
 d2dfda1 :     (LYS8)  (GLY141)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1oc4b1 :    (ALA21)  (HIS152)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Plasmodium berghei [TaxId: 5821]
 d3pqdb1 :     (ASN6)  (LYS134)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d4kqwa1 :    (LEU28)  (GLY125)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Slackia exigua [TaxId: 649764]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2