Protein Concepts Dictionary

Tableau information

Concept source:  d3qwfa_  amino acid (a.a.) range (LYS19)(GLY199)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS19)   (THR24) E1
	   (ILE30)   (GLY42) H2
	   (LYS44)   (ALA50) E3
	   (LYS54)   (GLY67) H4
	   (SER68)   (LYS74) E5
	   (GLN79)   (GLY95) H6
	   (ASP98)  (SER102) E7
	  (THR116)  (ARG140) H8
	  (GLY146)  (THR151) E9
	  (SER165)  (CYS185) H10
	  (LYS189)  (GLY199) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2     -172.7°   H2                                                                    
E3       -7.7° -167.3°   E3                                                             
H4      162.9°  -20.2°  170.4°   H4                                                      
E5      -28.9°  149.5°  -21.8° -167.7°   E5                                               
H6      156.8°  -17.5°  156.8°  -23.6°  153.2°   H6                                        
E7      -17.3°  165.5°  -24.9°  146.1°  -44.8°  151.5°   E7                                 
H8      166.2°  -14.3°  158.6°  -30.9°  137.3°  -31.0° -173.1°   H8                          
E9      -27.1°  154.1°  -34.8°  135.8°  -55.8°  140.2°  -11.6° -166.6°   E9                   
H10     152.5°  -30.1°  146.3°  -43.1°  124.6°  -47.2°  159.5°  -16.2° -165.4°   H10           
E11     -46.1°  133.1°  -53.0°  117.4°  -74.8°  118.0°  -33.5°  147.2°  -22.2° -160.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3r3sa_ :    (ARG50)  (PRO231)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
 d2naca1 :   (MET192)  (ASP308)   [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |Formate dehydrogenase |Pseudomonas sp., strain 101 [TaxId: 306]
 d1nasa_ :    (VAL10)  (TYR197)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sepiapterin reductase |Mouse (Mus musculus) [TaxId: 10090]
 d4esob_ :     (GLY7)  (PHE183)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d2pzma_ :     (ARG2)  (LEU163)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
 d2ekpa_ :     (GLU2)  (TYR176)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d4blua_ :    (ARG95)  (LEU224)   [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1i3ka_ :     (ALA2)  (ASN187)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d3v8bc_ :     (PRO6)  (ALA189)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d2gasa_ :     (LYS6)  (CYS163)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Alfalfa (Medicago sativa) [TaxId: 3879]
 d2x6ta_ :     (ILE2)  (ARG166)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Escherichia coli [TaxId: 562]
 d1i3kb_ :     (GLU3)  (ASN187)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) |Human (Homo sapiens) [TaxId: 9606]
 d1dohb_ :    (LYS30)  (GLY209)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) |Fungus (Magnaporthe grisea) [TaxId: 148305]
 d3guyg_ :     (LEU1)  (GLY173)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 419109]
 d2pzmb_ :     (ARG2)  (LEU163)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
 d4wecb_ :    (LYS10)  (GLY187)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d2x6tg_ :     (ILE2)  (ARG166)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Escherichia coli [TaxId: 562]
 d4weca_ :    (LYS10)  (GLY187)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2,    c.66