Protein Concepts Dictionary

Tableau information

Concept source:  d1d3aa1  amino acid (a.a.) range (THR22)(GLY153)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR22)   (GLY28) E1
	   (GLY30)   (ASP44) H2
	   (GLU48)   (ILE54) E3
	   (GLU56)   (ILE70) H4
	   (ASN75)   (GLN80) E5
	   (GLY84)   (ALA89) H6
	   (ASP92)   (THR97) E7
	   (ALA98)  (PRO105) E8
	  (THR108)  (ASP132) H9
	  (TYR133)  (THR138) E10
	  (VAL142)  (GLY153) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2     -161.9°   H2                                                                    
E3      -19.3° -172.8°   E3                                                             
H4      135.4°  -29.3°  154.6°   H4                                                      
E5      -34.8°  157.6°  -16.5° -168.3°   E5                                               
H6     -157.1°   30.0° -155.3°   40.8° -150.8°   H6                                        
E7      -17.7°  145.4°  -37.0°  117.7°  -52.5°  145.5°   E7                                 
E8      -30.4°  140.3°  -45.2°  111.4°  -61.7°  127.7°  -20.3°   E8                          
H9      144.1°  -43.3°  130.7°  -71.6°  114.4°  -58.2°  153.5°  173.8°   H9                   
E10     -38.3°  126.0°  -57.3°   97.3°  -73.1°  126.7°  -20.7°  -21.6°  155.2°   E10           
H11     119.4°  -76.8°  100.1° -105.2°   84.8°  -71.9°  137.1°  138.2°  -42.4°  157.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3d0oa1 :     (ASN7)  (GLY138)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
 d2v6ma1 :    (MET22)  (LEU152)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d3p7ma1 :     (LYS4)  (LYS132)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
 d3vpfe1 :    (GLN10)  (SER139)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Lactobacillus casei [TaxId: 1582]
 d3p7mb1 :     (LYS4)  (LYS132)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
 d1d3aa1 :    (THR22)  (GLY153)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Haloarcula marismortui [TaxId: 2238]
 d3vpga1 :    (MET21)  (LEU150)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Thermus caldophilus [TaxId: 272]
 d2d4ad1 :     (MET1)  (GLY131)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
 d3vkve1 :     (HIS9)  (LEU138)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Lactate dehydrogenase |Lactobacillus casei [TaxId: 1582]
 d4lmra1 :     (ILE5)  (GLU135)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
 d1hlpa1 :    (THR21)  (GLY151)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Haloarcula marismortui [TaxId: 2238]
 d1ib6a1 :     (MET1)  (ALA135)   [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2