Protein Concepts Dictionary

Tableau information

Concept source:  d2q2aa_  amino acid (a.a.) range (LYS127)(TRP239)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LYS127)  (GLN132) E1
	  (THR136)  (GLY146) H2
	  (HIS150)  (GLU155) E3
	  (THR157)  (ASN166) H4
	  (ASP170)  (ASP175) E5
	  (ASP175)  (ASN186) H6
	  (LYS190)  (ASP196) E7
	  (SER202)  (MET207) E8
	  (MET207)  (PRO210) E9
	  (LYS216)  (GLY230) H10
	  (LYS231)  (TRP239) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2     -156.3°   H2                                                                    
E3      -14.3° -168.9°   E3                                                             
H4      150.4°   52.4°  136.1°   H4                                                      
E5      -39.7°  127.3°  -50.0° -152.0°   E5                                               
H6       98.9° -104.2°   84.7°  -51.8°  119.3°   H6                                        
E7      -94.6°   65.5° -108.5°  114.3°  -62.9° -157.2°   E7                                 
E8      -24.5°  147.9°  -22.8° -134.8°  -63.5°  -90.7°  108.7°   E8                          
E9      -88.5°   73.7°  -95.8°  105.3°  100.3° -125.7°   72.7°  -74.5°   E9                   
H10      99.6°  -98.9°   91.8°  -67.1°  -86.7°   52.3° -107.4°  112.6° -171.9°   H10           
H11     134.0°  -65.3°  120.6°  -20.6° -161.0°   42.5° -130.7°  114.7°   97.1°  -76.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3vv5a_ :   (LYS118)  (TRP228)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
 d2v25a_ :   (ALA123)  (GLY232)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
 d3vv5b_ :   (LYS118)  (TRP228)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
 d1xt8b_ :   (LYS130)  (GLU238)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative amino-acid transporter CjaA |Campylobacter jejuni [TaxId: 197]
 d3vvda_ :   (LYS118)  (TRP228)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Thermus thermophilus [TaxId: 262724]
 d3k4ua_ :   (LEU114)  (ASP227)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Wolinella succinogenes [TaxId: 844]
 d1xt8a1 :   (LYS130)  (LEU240)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Putative amino-acid transporter CjaA |Campylobacter jejuni [TaxId: 197]
 d2q2aa_ :   (LYS127)  (TRP239)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d2yjpa_ :   (GLN158)  (LYS266)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Neisseria gonorrhoeae [TaxId: 242231]
 d2yjpb_ :   (GLN158)  (GLY273)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Neisseria gonorrhoeae [TaxId: 242231]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94