Protein Concepts Dictionary

Tableau information

Concept source:  d1w0ma_  amino acid (a.a.) range (PRO4)(ALA132)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEHEEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PRO4)   (PHE10) E1
	   (ARG20)   (LEU35) H2
	   (ASN38)   (ASN44) E3
	   (LEU48)   (SER54) H4
	   (ILE57)   (ALA61) E5
	   (GLN62)   (VAL66) E6
	   (LEU78)   (ALA84) H7
	   (SER87)   (ASN92) E8
	   (LYS99)  (GLY114) H9
	  (ASP116)  (PRO122) E10
	  (PRO124)  (ALA132) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      165.6°   H2                                                                    
E3      -20.4°  172.3°   E3                                                             
H4      133.1°  -37.8°  149.8°   H4                                                      
E5      -55.8°  135.3°  -37.0° -168.8°   E5                                               
E6       82.4° -111.8°   64.5° -119.8°   50.8°   E6                                        
H7       97.8°  -71.6°  116.1°  -35.4°  153.1°  127.7°   H7                                 
E8      -73.1°  109.5°  -64.2°  142.1°  -40.5°  -86.0°  144.4°   E8                          
H9      117.0°  -59.7°  126.7°  -27.8°  147.8°   99.0°  -35.0° -169.1°   H9                   
E10     -73.1°  104.9°  -70.4°  129.8°  -55.6° -103.5°  126.9°  -17.7° -156.6°   E10           
H11     103.5°  -85.2°   96.1°  -74.2°   97.9°   47.9°  -82.3°  133.1°  -51.1°  150.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2y6za_ :    (GLN25)  (GLY152)   [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d1lyxa_ :     (TYR5)  (ASN137)   [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d1w0mf_ :     (PRO4)  (ALA132)   [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Thermoproteus tenax [TaxId: 2271]
 d1w0mg_ :     (PRO4)  (GLY134)   [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Thermoproteus tenax [TaxId: 2271]
 d3pswa_ :     (TYR5)  (ASN137)   [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d1vgaa_ :     (TYR5)  (ASN137)   [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d1w0ma_ :     (PRO4)  (ALA132)   [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Thermoproteus tenax [TaxId: 2271]
 d1hg3a_ :     (PRO7)  (ALA135)   [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Pyrococcus woesei [TaxId: 2262]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1