Protein Concepts Dictionary

Tableau information

Concept source:  d2ar3a1  amino acid (a.a.) range (MET1)(SER156)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEHEEEHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET1)    (LEU7) E1
	   (TYR13)   (CYS17) H2
	   (TYR25)   (ASN30) E3
	   (PRO36)   (THR46) H4
	   (GLU50)   (ASP59) E5
	   (GLN61)   (ILE66) E6
	   (ILE87)   (TYR93) E7
	   (GLY98)  (TYR119) H8
	  (THR128)  (SER133) H9
	  (HIS139)  (GLY145) H10
	  (TRP147)  (SER156) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      138.8°   H2                                                                    
E3       90.7°   94.0°   E3                                                             
H4      -26.6°  120.5°  114.2°   H4                                                      
E5      148.4°  -68.8°  -68.5° -169.1°   E5                                               
E6      -40.9° -109.8°  126.9°   14.4° -164.2°   E6                                        
E7      104.9°   86.0°  -14.9°  129.0°  -53.8°  141.8°   E7                                 
H8      -82.7°  -94.9°  171.1°  -61.0°  114.8°  -49.4°  167.3°   H8                          
H9      -46.9°   94.2° -112.4°   27.4° -163.0°   24.0° -125.6°   67.1°   H9                   
H10    -145.7°  -12.8°   83.4° -131.9°   58.1° -122.1°   74.1° -105.5° -104.8°   H10           
H11    -103.0° -105.9°  128.0°  -96.2°   74.9°  -90.9°  118.9°  -48.7° -113.3°  107.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1yb0a1 :     (MET1)  (SER156)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase PlyG |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d2ar3b_ :     (ARG4)  (LYS155)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase PlyG |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d2ar3a1 :     (MET1)  (SER156)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase PlyG |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d1yb0b_ :     (MET1)  (GLY157)   [view usage] : d.118.1.1 |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase-like |N-acetylmuramoyl-L-alanine amidase PlyG |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.118