Protein Concepts Dictionary

Tableau information

Concept source:  d1ayla2  amino acid (a.a.) range (ASP93)(GLY227)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEEHHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP93)   (SER98) E1
	   (SER98)  (SER114) H2
	  (ARG117)  (ALA123) E3
	  (SER134)  (THR139) E4
	  (ALA142)  (PHE152) H5
	  (SER156)  (ALA161) H6
	  (ASP166)  (GLY172) E7
	  (GLN179)  (GLY184) H8
	  (VAL191)  (LEU195) E9
	  (MET199)  (GLY204) E10
	  (TYR207)  (GLY227) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      -94.9°   H2                                                                    
E3     -115.0° -120.4°   E3                                                             
E4       87.5°   60.4°  156.5°   E4                                                      
H5     -114.7° -115.2°    5.7°  157.8°   H5                                               
H6      -21.7° -114.3°  109.1°  -89.3°  111.0°   H6                                        
E7       95.6°   66.4°  146.6°  -10.6°  148.8°  -94.4°   E7                                 
H8       94.0° -163.3°  -42.9° -134.2°   48.1°   77.4° -126.6°   H8                          
E9      -64.3° -116.7°  -51.6°  151.6°  -50.5°   65.6°  159.6°   55.6°   E9                   
E10     109.9°   67.7°  132.8°  -23.8°  134.6° -107.2°  -14.3° -122.0°  172.4°   E10           
H11     -83.3° -137.0°  -33.1°  160.8°  -35.1°   76.0°  156.6°   30.9°  -26.6°  152.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1aq2a2 :    (ASP93)  (LEU222)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d2pxzx2 :    (ASP93)  (GLY227)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d1ayla2 :    (ASP93)  (GLY227)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d1ytma1 :    (LYS88)  (GLY220)   [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
 d1k3ca2 :    (ASP93)  (GLY227)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d2py7x2 :    (ASP93)  (GLY227)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d1ygga1 :    (LYS95)  (GLY227)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Actinobacillus succinogenes [TaxId: 67854]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.109