Protein Concepts Dictionary

Tableau information

Concept source:  d4grmd2  amino acid (a.a.) range (GLU126)(ALA245)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEEEEHEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLU126)  (PRO132) E1
	  (SER133)  (HIS139) H2
	  (LYS142)  (LEU148) E3
	  (HIS156)  (TRP162) E4
	  (GLY171)  (ASP175) E5
	  (PRO176)  (GLN182) E6
	  (LEU185)  (SER188) H7
	  (TYR190)  (SER199) E8
	  (SER199)  (ASP205) H9
	  (ASN208)  (GLY218) E10
	  (THR234)  (ALA245) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      -41.6°   H2                                                                    
E3      164.4°  151.0°   E3                                                             
E4      -35.0°  -51.8°  150.4°   E4                                                      
E5      138.0°  137.9°  -30.3°  163.7°   E5                                               
E6      117.0°  152.8°  -47.6°  124.6°   39.8°   E6                                        
H7      -52.6°  -24.6°  143.0°  -42.8° -152.6°  167.2°   H7                                 
E8      -30.1°  -36.1°  161.7°  -15.7°  167.8°  137.5°  -29.8°   E8                          
H9     -119.2° -135.5°   60.3°   90.2°  -85.2°  -64.7°  112.0°  104.0°   H9                   
E10     155.1°  126.7°  -25.8°  166.6°  -27.8°  -63.7°  129.0°  158.7°  -84.4°   E10           
E11     -17.9°  -55.9°  153.1°  -26.4°  140.2°  108.2°  -59.7°  -30.8° -101.6°  167.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1kgce2 :   (GLU127)  (ALA246)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
 d3o6fh2 :   (GLU124)  (ALA243)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
 d2ntsp2 :   (VAL123)  (ARG245)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
 d4grmd2 :   (GLU126)  (ALA245)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3o6fd2 :   (GLU124)  (ALA243)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1