Protein Concepts Dictionary

Tableau information

Concept source:  d2vu9a1  amino acid (a.a.) range (GLU939)(LYS1056)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEEEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLU939)  (LYS951) E1
	  (ASN954)  (ASN960) H2
	  (ASN960)  (ILE965) E3
	  (VAL976)  (TYR980) E4
	  (ILE984)  (THR990) E5
	  (ILE993) (MET1004) E6
	 (SER1008) (ARG1013) H7
	 (VAL1017) (ARG1023) E8
	 (SER1027) (ILE1031) E9
	 (ILE1036) (PRO1040) E10
	 (ASN1051) (LYS1056) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2     -165.5°   H2                                                                    
E3      125.7°  -68.4°   E3                                                             
E4      -32.6° -133.1°  153.1°   E4                                                      
E5      143.5°   37.5°  -71.4°  135.1°   E5                                               
E6      -27.8° -149.6°  114.5°  -38.6° -171.2°   E6                                        
H7      -87.6°  103.1°   63.1° -115.5°   71.7° -104.6°   H7                                 
E8      155.3°   14.6°  -77.8°  127.1°  -27.9°  156.5°  -98.8°   E8                          
E9      -34.5° -152.0°   97.6°  -55.8°  161.8°  -18.5°   90.6°  166.1°   E9                   
E10     143.5°   31.2°  -82.2°  124.6°  -15.0°  162.9°  -85.7°  -17.7°  176.0°   E10           
E11     -11.0° -155.4° -133.3°   22.5°  146.8°  -24.5°  -98.4°  148.9°  -37.1°  142.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3fuoa1 :   (GLU938) (LYS1055)   [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |automated matches |Clostridium botulinum [TaxId: 1491]
 d2nyya3 :   (ASN940) (LYS1056)   [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |Botulinum neurotoxin |Clostridium botulinum, serotype A [TaxId: 1491]
 d2vu9a1 :   (GLU939) (LYS1056)   [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |automated matches |Clostridium botulinum [TaxId: 36826]
 d4iqpa1 :   (GLU939) (LYS1056)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]
 d4jrab1 :   (GLU939) (LYS1056)   [view usage] : b.29.1.6 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Clostridium neurotoxins, the second last domain |automated matches |Clostridium botulinum [TaxId: 1491]
 d3rsja1 :   (ASN933) (ARG1063)   [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Clostridium botulinum [TaxId: 1491]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.29