Protein Concepts Dictionary

Tableau information

Concept source:  d1ge8a2  amino acid (a.a.) range (THR131)(LEU243)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEEEEEHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR131)  (VAL135) E1
	  (GLY138)  (VAL151) H2
	  (ASP153)  (ALA159) E3
	  (ASN162)  (GLU171) E4
	  (THR172)  (LEU181) E5
	  (LEU187)  (GLN192) E6
	  (GLU194)  (GLY200) E7
	  (VAL201)  (LYS209) H8
	  (ASP215)  (PHE221) E9
	  (PRO226)  (TYR232) E10
	  (GLY237)  (LEU243) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      111.6°   H2                                                                    
E3      101.1°  135.3°   E3                                                             
E4      -94.3°  -22.1°  157.2°   E4                                                      
E5       81.1° -164.3°  -29.4°  173.5°   E5                                               
E6      176.5°  -71.8°  -75.5°   89.2°  -95.3°   E6                                        
E7      -69.3°  -62.2°  162.2°  -40.6°  132.9°  113.7°   E7                                 
H8      -40.8° -147.4°   76.1° -125.7°   48.1°  136.3°   87.4°   H8                          
E9      170.9°   59.8°  -84.9°   78.0° -106.9°  -12.3°  106.7°  148.3°   E9                   
E10     -26.8° -136.4°   83.6° -116.3°   58.1°  150.2°  -81.8°  -14.2°  162.4°   E10           
E11     137.8°   30.6° -105.8°   52.3° -133.9°  -45.2°   90.7°  178.0°  -33.1°  164.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3aizc2 :   (PRO129)  (ALA242)   [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 273063]
 d1iz4a2 :   (THR131)  (ALA244)   [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Pyrococcus furiosus [TaxId: 2261]
 d1sxjg2 :   (ASP134)  (ALA251)   [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1iz5a2 :   (THR131)  (ALA244)   [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Pyrococcus furiosus [TaxId: 2261]
 d3ifvc2 :   (ALA128)  (MET239)   [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Haloferax volcanii [TaxId: 2246]
 d1ge8a2 :   (THR131)  (LEU243)   [view usage] : d.131.1.2 |DNA clamp |DNA clamp |DNA polymerase processivity factor |Proliferating cell nuclear antigen (PCNA) |Pyrococcus furiosus [TaxId: 2261]
 d3lx2a2 :   (THR131)  (ALA245)   [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 311400]
 d3lx1a2 :   (THR131)  (LEU243)   [view usage] : d.131.1.0 |DNA clamp |DNA clamp |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 311400]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.131