Protein Concepts Dictionary

Tableau information

Concept source:  d4j1ue2  amino acid (a.a.) range (SER119)(ARG216)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EHEEEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER119)  (PRO124) E1
	  (ASP127)  (GLY133) H2
	  (GLY133)  (ASN142) E3
	  (ASN142)  (PRO146) E4
	  (ALA149)  (VAL155) E5
	  (ALA158)  (GLY162) E6
	  (ASN163)  (THR169) E7
	  (SER176)  (SER187) E8
	  (SER187)  (LYS193) H9
	  (TYR197)  (HIS203) E10
	  (VAL210)  (ARG216) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
H2      -46.0°   H2                                                                    
E3      171.2°  142.2°   E3                                                             
E4     -132.7°   86.7°   55.7°   E4                                                      
E5      -28.1°  -57.5°  146.3°  133.2°   E5                                               
E6       94.5°   79.6°  -91.1°  -71.9°  122.4°   E6                                        
E7      138.7°  144.8°  -39.3°  -77.5°  148.9°  -65.7°   E7                                 
E8      -19.6°  -35.9°  161.5°  119.0°  -22.1°  104.2°  158.3°   E8                          
H9     -107.0° -114.6°   67.7°   92.1°   79.0° -158.5°  -97.4°   96.0°   H9                   
E10     161.3°  117.6°  -27.4°   32.4°  160.6°  -71.1°  -46.5°  151.4°   87.7°   E10           
E11     -17.8°  -63.7°  153.5° -150.4°  -27.5°  101.8°  127.3°  -33.0°  -99.1°  171.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4j1ue2 :   (SER119)  (ARG216)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2hh0l2 :   (SER158)  (SER268)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain kappa constant domain, CL-kappa |Human (Homo sapiens) [TaxId: 9606]
 d3pgfl2 :   (SER114)  (ARG211)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2nz9c2 :   (SER118)  (ARG215)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain kappa constant domain, CL-kappa |Human (Homo sapiens) [TaxId: 9606]
 d1rz7l2 :   (SER114)  (ARG211)   [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin light chain kappa constant domain, CL-kappa |Human (Homo sapiens) [TaxId: 9606]
 d4l4ja1 :   (ALA237)  (LYS338)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1