Protein Concepts Dictionary

Tableau information

Concept source:  d1urdb_  amino acid (a.a.) range (ASP266)(LYS395)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEHHHHHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP266)  (PRO271) E1
	  (GLY278)  (ALA290) E2
	  (GLN299)  (THR310) H3
	  (SER311)  (GLN323) H4
	  (LEU328)  (SER334) H5
	  (SER334)  (SER340) H6
	  (SER340)  (GLN349) H7
	  (ALA353)  (ILE359) E8
	  (MET362)  (ALA368) H9
	  (LEU372)  (GLY378) H10
	  (SER381)  (LYS395) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2     -105.7°   E2                                                                    
H3     -110.2°  136.7°   H3                                                             
H4      118.4°  128.1°  -48.6°   H4                                                      
H5     -129.6°  120.4°  -19.4°  -44.0°   H5                                               
H6      -84.4°  147.7°   60.8°   34.2°  -68.0°   H6                                        
H7      -14.3° -116.6° -103.2°  104.3° -121.9°  -70.2°   H7                                 
E8       72.9°  -51.3°  165.2°  116.9°  153.5°  106.0°  -76.3°   E8                          
H9      122.8° -117.4°   59.5°   12.1°   51.9°   39.6°  108.6° -106.3°   H9                   
H10     104.2° -149.0°   32.3°  -23.1°  -38.1°   30.0°   91.7°  133.3°  -35.2°   H10           
H11     -78.6°   27.3° -151.4°  151.5°  142.7°  147.6°  -90.4°   42.6°  139.4°  174.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ursa_ :   (ASP266)  (LYS395)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
 d1urdb_ :   (ASP266)  (LYS395)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
 d1urda_ :   (ASP266)  (LYS395)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
 d1ursb_ :   (ASP266)  (LYS395)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
 d1urga_ :   (ASP266)  (GLN400)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94