Protein Concepts Dictionary

Tableau information

Concept source:  d1s16a2  amino acid (a.a.) range (LYS1053)(ASP1204)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEHHHEEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	 (LYS1053) (LEU1059) E1
	 (SER1064) (ASP1070) E2
	 (ALA1086) (LEU1091) H3
	 (HIS1112) (ILE1116) H4
	 (ILE1116) (LEU1122) H5
	 (LYS1124) (VAL1130) E6
	 (GLN1135) (ASN1143) E7
	 (ASP1149) (GLY1154) E8
	 (GLY1162) (THR1172) E9
	 (VAL1181) (LEU1194) H10
	 (VAL1198) (ASP1204) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      169.4°   E2                                                                    
H3      -50.0°  138.7°   H3                                                             
H4       57.4° -112.0°  -99.9°   H4                                                      
H5       18.4° -152.2°  -68.4°   44.0°   H5                                               
E6      155.5°  -14.0°  147.5°   98.0° -139.4°   E6                                        
E7      -38.1°  152.4°  -30.1°  -95.4°  -52.9°  166.3°   E7                                 
E8      115.4°  -56.0°  123.3°   64.8°  107.6°  -44.6°  146.9°   E8                          
E9      -27.7°  162.8°  -31.1°   85.1°   43.5° -176.8°  -10.6°  137.9°   E9                   
H10    -177.2°  -10.3°  129.0° -121.8° -162.5°  -23.9°  142.8°  -62.6°  153.0°   H10           
E11     -11.9°  157.5°  -59.9°   45.5°   11.4°  143.6°  -49.9°  105.1°  -39.6° -167.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1qzrb2 :    (ARG83)  (ASN238)   [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA topoisomerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1pvgb2 :    (ARG83)  (ASN238)   [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA topoisomerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1pvga2 :    (ARG83)  (LEU237)   [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA topoisomerase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1ei1a2 :    (LYS57)  (ASP207)   [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |DNA gyrase B |Escherichia coli [TaxId: 562]
 d1s16a2 :  (LYS1053) (ASP1204)   [view usage] : d.122.1.2 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |DNA gyrase/MutL, N-terminal domain |Topoisomerase IV subunit B |Escherichia coli [TaxId: 562]
 d3cwva1 :    (ARG51)  (ASP193)   [view usage] : d.122.1.0 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |automated matches |automated matches |Myxococcus xanthus [TaxId: 246197]
 d4prva1 :    (LYS57)  (ASP207)   [view usage] : d.122.1.0 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |automated matches |automated matches |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.122