Protein Concepts Dictionary

Tableau information

Concept source:  d1ckjb_  amino acid (a.a.) range (GLY67)(ASN212)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEHHEEHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY67)   (TRP73) E1
	   (ASN81)   (GLU86) E2
	   (SER91)  (SER100) H3
	  (LEU105)  (SER124) H4
	  (ASN126)  (ASP131) E5
	  (PHE137)  (GLY144) E6
	  (GLY144)  (LEU149) H7
	  (LEU149)  (ASP154) E8
	  (LEU157)  (ARG162) E9
	  (SER186)  (GLY192) H10
	  (ASP199)  (ASN212) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      132.1°   E2                                                                    
H3      123.5°  -54.0°   H3                                                             
H4      -53.9°  134.7° -171.1°   H4                                                      
E5       93.0°  -88.9°  -36.7°  135.5°   E5                                               
E6       77.3°  -54.9°   84.6°  102.3°   97.1°   E6                                        
H7     -124.7°  102.8°  -91.1°  -85.1°  -94.1° -154.7°   H7                                 
E8      -54.7° -172.6° -120.9°  -50.3°   87.4°  132.0°  -71.0°   E8                          
E9     -106.8°   87.2°  129.0°  -56.0°  156.4°  -99.7°   64.2°  -93.6°   E9                   
H10      52.3° -169.0° -115.0°   56.2°  -80.5°  129.1°   75.2°    7.7°  101.3°   H10           
H11     110.9°  -53.0°   15.8°  164.8°   36.6°  -71.1° -106.8°  123.9° -137.5° -116.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ckja_ :    (GLY67)  (LEU213)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4hnfb_ :    (CYS71)  (LEU208)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Human (Homo sapiens) [TaxId: 9606]
 d1csna_ :    (GLY67)  (LEU212)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
 d1ckjb_ :    (GLY67)  (ASN212)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d3sv0a_ :    (GLY64)  (LEU207)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Oryza sativa [TaxId: 39947]
 d4hokg_ :    (GLY64)  (LEU208)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3uzpa_ :    (GLY64)  (LEU208)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.144