Protein Concepts Dictionary

Tableau information

Concept source:  d1ypof_  amino acid (a.a.) range (ASP147)(LYS267)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEHHEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP147)  (GLY152) E1
	  (CYS155)  (GLY161) E2
	  (ASN164)  (ASP176) H3
	  (THR185)  (SER196) H4
	  (PHE200)  (GLY205) E5
	  (GLY205)  (ASN210) E6
	  (LEU227)  (GLY232) E7
	  (SER235)  (PRO239) E8
	  (GLY241)  (ILE246) E9
	  (ALA250)  (GLU254) E10
	  (PHE261)  (LYS267) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      146.1°   E2                                                                    
H3      -79.3°  134.4°   H3                                                             
H4      148.5°  -45.0°  102.2°   H4                                                      
E5      -59.4°  124.2°  -64.9°  149.8°   E5                                               
E6       87.2°   63.9° -141.3° -107.9°  -77.0°   E6                                        
E7     -136.3°   11.3°  142.1°   56.1° -116.6°  -52.5°   E7                                 
E8     -140.7°   62.5°  -76.7°   68.0°  -82.2°  -92.4°   66.6°   E8                          
E9       77.2° -115.2°   68.2°  -74.4°  120.0°  143.4°  123.4°  120.5°   E9                   
E10    -123.0°   48.3° -113.3°   85.9°  -75.9°  -47.2°  -42.6°   45.2°  159.8°   E10           
E11     -53.6°  155.4°  -29.3°  131.3°  -42.8° -117.7° -155.0°  -93.1°   78.8° -112.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ypqa1 :   (ASP147)  (LYS267)   [view usage] : d.169.1.1 |C-type lectin-like |C-type lectin-like |C-type lectin domain |Oxidised low density lipoprotein |Human (Homo sapiens) [TaxId: 9606]
 d1yxka_ :   (ASP147)  (LYS267)   [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ypof_ :   (ASP147)  (LYS267)   [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1yxja_ :   (ASP147)  (LYS267)   [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ypoa_ :   (ASP147)  (LYS267)   [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ypod_ :   (ASP147)  (LYS267)   [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1yxjb_ :   (ASP147)  (LYS267)   [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3vlga_ :   (ASP147)  (LYS267)   [view usage] : d.169.1.0 |C-type lectin-like |C-type lectin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.169