Protein Concepts Dictionary

Tableau information

Concept source:  d1f4wh1  amino acid (a.a.) range (VAL2)(HIS99)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEHEEEHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (VAL2)    (SER7) E1
	   (GLY16)   (GLY26) E2
	   (VAL28)   (ASP33) H3
	   (ASP33)   (PRO41) E4
	   (ARG44)   (SER52) E5
	   (GLY56)   (PRO61) E6
	   (PRO61)   (ARG67) H7
	   (ARG67)   (ASP73) E8
	   (LEU79)   (SER85) E9
	   (GLN87)   (MET93) H10
	   (MET93)   (HIS99) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      159.4°   E2                                                                    
H3      -81.7°  118.3°   H3                                                             
E4      -54.4°  122.9°   74.7°   E4                                                      
E5      107.9°  -71.2° -110.6°  161.5°   E5                                               
E6      -62.9°  123.2°   54.4°  -21.3° -161.9°   E6                                        
H7       60.8° -107.1° -122.8°  108.5°  -53.4°  123.0°   H7                                 
E8      134.1°  -29.8° -140.8°  135.0°  -51.2°  146.6°  -77.3°   E8                          
E9      -27.0°  169.5°  -55.0°  -49.6°  117.9°  -46.8°   83.2°  160.2°   E9                   
H10    -137.2°   24.4°  131.7°  103.3°  -86.4°  111.0° -103.9°  -35.7° -152.3°   H10           
E11     149.7°  -42.5°   92.1°  151.6°  -46.8°  134.8°  -99.8°  -49.3°  139.4°   66.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3eaka_ :     (GLN1)  (ARG103)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Camel (Camelus dromedarius) [TaxId: 9838]
 d1hilb1 :     (VAL2)   (TYR98)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
 d1f4wh1 :     (VAL2)   (HIS99)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
 d3auvb2 :   (VAL136)  (PHE235)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1b2wh1 :     (VAL2)   (GLY99)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Engineered (including hybrid species)
 d1ob1b1 :     (GLY8)   (TYR97)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
 d1kelh1 :    (GLY10)  (ARG100)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 1 [TaxId: 10090]
 d1uweh1 :     (GLY8)  (GLY100)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
 d1i3ua_ :     (VAL2)  (LYS104)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Camelid IG heavy chain variable domain, VHh |Llama (Lama glama) [TaxId: 9844]
 d3auva2 :   (VAL136)  (PHE235)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ncbh1 :     (GLY8)   (ARG94)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
 d1igfh1 :     (VAL2)   (SER97)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
 d4nbzb_ :     (VAL2)  (GLN101)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Llama (Lama glama) [TaxId: 9844]
 d3auvf2 :   (VAL136)  (PHE235)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1i8ib_ :   (VAL302)  (SER401)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
 d3stbb_ :     (GLN5)  (ARG101)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
 d4nbzd_ :     (VAL2)  (GLN101)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Llama (Lama glama) [TaxId: 9844]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1