Protein Concepts Dictionary

Tableau information

Concept source:  d3sepa1  amino acid (a.a.) range (ALA97)(PRO218)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEHEEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA97)  (ASN102) E1
	  (PRO119)  (GLU131) E2
	  (GLU131)  (GLU136) H3
	  (THR139)  (GLY145) E4
	  (HIS151)  (ASN155) E5
	  (GLY160)  (ASP164) E6
	  (LEU167)  (ASP172) E7
	  (GLY180)  (TRP191) E8
	  (GLY194)  (ASP199) H9
	  (TRP203)  (GLY207) E10
	  (SER213)  (PRO218) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2     -111.6°   E2                                                                    
H3       55.0°  -88.0°   H3                                                             
E4      -60.2°  148.5°  106.4°   E4                                                      
E5     -148.5°  -37.1° -108.3°  145.2°   E5                                               
E6      -40.9°  123.4°   95.6°  -29.6°  145.6°   E6                                        
E7      131.6°  -45.5°  -79.3°  163.0°  -31.9°  167.4°   E7                                 
E8       46.8°  158.4°   79.1°  -29.3°  164.4°  -42.4°  145.1°   E8                          
H9      -54.5°  107.2°  108.6°  -42.0°  125.5°   20.2° -152.3°  -61.8°   H9                   
E10     136.0°  -43.0°  -84.7°  162.0°   26.1°  166.4°   -5.8° -149.8°  148.3°   E10           
E11      85.8°  -41.5°   46.7°  146.1°  -66.5°  120.6°  -48.0°  124.5°  118.3°  -51.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4duvb1 :    (ALA97)  (PRO218)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1yq2a3 :    (ARG95)  (ALA219)   [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |beta-Galactosidase |Arthrobacter sp. c2-2 [TaxId: 192168]
 d3sepa1 :    (ALA97)  (PRO218)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d4duva1 :    (ALA97)  (PRO218)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d3vd9b1 :    (ALA97)  (PRO218)   [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |beta-Galactosidase |Escherichia coli [TaxId: 562]
 d3t0ba1 :    (ALA97)  (PRO218)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1bgla3 :    (ALA97)  (PRO218)   [view usage] : b.18.1.5 |Galactose-binding domain-like |Galactose-binding domain-like |beta-Galactosidase/glucuronidase, N-terminal domain |beta-Galactosidase |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.18