Protein Concepts Dictionary

Tableau information

Concept source:  d4hmia_  amino acid (a.a.) range (LYS6)(LYS136)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEHEEEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS6)   (PRO11) E1
	   (THR33)   (LEU38) E2
	   (LEU38)   (PRO42) E3
	   (TYR54)   (ALA69) H4
	   (LYS71)   (ASP77) E5
	   (GLY86)   (TYR91) E6
	   (TYR91)   (ASP95) E7
	   (MET98)  (GLY107) H8
	  (ALA112)  (LYS116) E9
	  (LYS116)  (HIS121) H10
	  (LEU125)  (LYS136) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2     -149.0°   E2                                                                    
E3      -51.0°  108.5°   E3                                                             
H4      -75.7°  110.4° -124.2°   H4                                                      
E5      145.2°   61.2° -117.4°  115.9°   E5                                               
E6     -115.3°  -42.3°  108.0°   78.0°   99.5°   E6                                        
E7      -55.5° -102.5°   80.3°   53.5°  158.3°   61.2°   E7                                 
H8      -99.7°  -56.7°   51.9°  143.7°  -88.7°  -71.6°   93.8°   H8                          
E9      125.1°  -83.0°  157.3°  -65.8°   50.3°  -93.7° -117.1° -134.3°   E9                   
H10     -74.5°  -79.2°  -79.8°   70.2°  139.9°   41.0°   24.8°  -73.9° -122.2°   H10           
H11     -76.6°  -76.3°   34.7°  128.1° -111.9°   75.5°   74.7°  -24.3° -158.2°   60.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2eyfa_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3sk6a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3tp7a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d3v2ta_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3p1ha_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d3nhha_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3sk5a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d4khva_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3mxpa_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d4me5a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d4ndxa_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d4hmia_ :     (LYS6)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d4iala_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d4j6ha_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d2ey2a_ :     (LYS6)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3nk9a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d4k2la_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3mz5a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d4iz8a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d2eyha_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3hzxa_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d1stya_ :     (LYS6)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d3meha_ :    (GLU10)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d3np8a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |automated matches |Staphylococcus aureus [TaxId: 1280]
 d2eyma_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
 d2ey6a_ :     (LEU7)  (LYS136)   [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.40