Protein Concepts Dictionary

Tableau information

Concept source:  d2wkoa_  amino acid (a.a.) range (ALA1)(VAL148)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEHHEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ALA1)   (ASP11) E1
	   (PRO13)   (GLU24) E2
	   (GLY27)   (GLY37) E3
	   (GLY41)   (VAL47) E4
	   (PHE50)   (GLY56) H5
	   (GLY56)   (GLY61) H6
	   (GLY85)   (ASP90) E7
	   (ALA93)  (SER102) E8
	  (GLY114)  (HIS120) E9
	  (ASN131)  (THR137) H10
	  (LEU144)  (VAL148) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      166.2°   E2                                                                    
E3      -26.7°  167.0°   E3                                                             
E4      124.2°  -51.2°  133.7°   E4                                                      
H5       23.0° -168.5°   12.7°  121.6°   H5                                               
H6     -127.6°   38.6° -154.0°   51.3°  147.5°   H6                                        
E7      -61.3°  131.2°  -36.4°  143.8°  -47.3° -159.5°   E7                                 
E8      146.5°  -20.1°  172.7°  -42.6°  160.9°   20.2°  150.9°   E8                          
E9      -49.5°  130.2°  -49.7°  163.4°   59.7° -117.5°  -51.0°  131.4°   E9                   
H10     132.5°  -58.9°  111.5°   58.5° -110.1°   92.4°   90.8°  -72.6° -138.0°   H10           
E11     142.1°  -40.8°  135.9°  -26.9° -128.2°   62.6°  124.1°  -45.1°  166.9°   33.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2xjla_ :     (ALA1)  (VAL148)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3cqpa_ :     (THR2)  (VAL148)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Human (Homo sapiens) [TaxId: 9606]
 d2e46a_ :     (GLY3)  (VAL152)   [view usage] : b.1.8.0 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |automated matches |automated matches |Silkworm (Bombyx mori) [TaxId: 7091]
 d1azva_ :     (THR2)  (VAL148)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Human (Homo sapiens) [TaxId: 9606]
 d2zkya_ :     (THR2)  (VAL148)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Human (Homo sapiens) [TaxId: 9606]
 d1uxla_ :     (THR2)  (VAL148)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Human (Homo sapiens) [TaxId: 9606]
 d2wkoa_ :     (ALA1)  (VAL148)   [view usage] : b.1.8.1 |Immunoglobulin-like beta-sandwich |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase-like |Cu,Zn superoxide dismutase, SOD |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1