Protein Concepts Dictionary

Tableau information

Concept source:  d4iawa_  amino acid (a.a.) range (THR52)(ASP173)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR52)   (LEU58) E1
	   (LYS62)   (PHE71) E2
	   (MET75)   (PRO85) E3
	   (GLY90)   (LEU94) E4
	   (ASN96)  (PRO101) H5
	  (THR104)  (VAL110) E6
	  (GLN117)  (LYS125) E7
	  (ARG130)  (ARG140) E8
	  (SER146)  (GLY160) H9
	  (PRO162)  (VAL167) H10
	  (VAL167)  (ASP173) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      163.4°   E2                                                                    
E3      -35.7°  160.9°   E3                                                             
E4      100.9°  -73.9°  112.3°   E4                                                      
H5      154.3°   29.0° -140.3°  -54.3°   H5                                               
E6      -85.6°   94.0°  -85.1°  158.2°  120.0°   E6                                        
E7       89.5°  -96.2°   79.6°  -41.9°  -67.5°  159.8°   E7                                 
E8      -86.4°   85.0° -102.8°  128.9°  113.9°  -29.9°  168.9°   E8                          
H9       86.6° -104.1°   66.1°  -62.5°  -75.8°  139.1°  -20.7°  167.7°   H9                   
H10     -70.6°   92.8° -106.0°   79.9°  107.3°  -82.8°  114.0°  -54.9°  131.3°   H10           
E11     -85.0°   78.8° -119.2°   83.9°   97.8°  -75.9°  123.2°  -46.1°  143.0°  -16.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3bx7a_ :    (ASN50)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4iawa_ :    (THR52)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
 d4iaxa_ :    (THR52)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
 d3by0c_ :    (PRO48)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
 d4iawb_ :    (THR52)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
 d3i0aa_ :    (TYR52)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
 d1x89c_ :    (LYS50)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
 d1l6ma_ :    (PRO48)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]
 d3dszb_ :    (PRO48)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3pedc_ :    (TYR52)  (ASP173)   [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Neutrophil gelatinase-associated lipocalin (NGAL) |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.60