Protein Concepts Dictionary

Tableau information

Concept source:  d3gmja_  amino acid (a.a.) range (SER263)(LYS371)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER263)  (GLU268) E1
	  (VAL276)  (ASN280) E2
	  (ASN282)  (ASP287) E3
	  (ASP297)  (LEU301) E4
	  (ASN310)  (ILE320) H5
	  (GLY323)  (VAL329) E6
	  (GLU332)  (CYS337) E7
	  (SER341)  (SER347) E8
	  (SER347)  (GLY355) H9
	  (SER359)  (PRO365) E10
	  (GLY367)  (LYS371) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      147.7°   E2                                                                    
E3      -13.0°  144.0°   E3                                                             
E4      -12.8° -159.4°  -21.8°   E4                                                      
H5      134.8°   13.9° -130.1° -147.4°   H5                                               
E6      160.3°  -41.5°  172.9°  151.1°  -55.4°   E6                                        
E7      -28.6°  124.8°  -19.4°  -40.3°  110.8°  166.0°   E7                                 
E8      123.1°  -82.4°  132.5°  111.2°  -96.2°  -41.2°  151.5°   E8                          
H9      -96.2°   68.3° -106.3°  -98.8°   69.5°   70.6° -103.3°  -77.5°   H9                   
E10     -85.0°   68.4°  -76.6°  -97.4°   54.7°  109.6°  -57.3°  150.8°   92.8°   E10           
E11     128.4°  -77.9°  137.4°  116.3°  -91.8°  -36.4°  156.6°    5.3°   78.5°  146.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1khua_ :   (SER273)  (LYS381)   [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad1 |Human (Homo sapiens) [TaxId: 9606]
 d1mk2a_ :   (SER233)  (LYS340)   [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad3 MH2 domain |Human (Homo sapiens) [TaxId: 9606]
 d3gmjc_ :   (SER263)  (LYS371)   [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d1deva_ :   (SER276)  (LYS383)   [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad2 MH2 domain |Human (Homo sapiens) [TaxId: 9606]
 d1khud_ :   (SER273)  (LYS381)   [view usage] : b.26.1.1 |SMAD/FHA domain |SMAD/FHA domain |SMAD domain |Smad1 |Human (Homo sapiens) [TaxId: 9606]
 d3gmja_ :   (SER263)  (LYS371)   [view usage] : b.26.1.0 |SMAD/FHA domain |SMAD/FHA domain |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.26