Protein Concepts Dictionary

Tableau information

Concept source:  d2j1ta_  amino acid (a.a.) range (PRO23)(ARG149)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEHEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO23)   (SER27) E1
	   (VAL52)   (ARG56) E2
	   (TRP62)   (LYS68) E3
	   (GLY74)   (ASN80) E4
	   (GLU85)   (SER90) H5
	   (ASN91)   (TYR97) E6
	  (VAL104)  (ASN110) E7
	  (SER116)  (LYS122) E8
	  (ARG127)  (THR135) E9
	  (VAL138)  (GLU144) E10
	  (GLU144)  (ARG149) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      -37.8°   E2                                                                    
E3      158.2°  121.7°   E3                                                             
E4      -53.6°  -74.7°  140.8°   E4                                                      
H5       95.9°   74.2°  -65.6°  147.9°   H5                                               
E6      138.2°  101.3°  -20.4°  141.9°   53.8°   E6                                        
E7      -54.7°  -90.6°  147.1°  -35.8° -137.2°  166.5°   E7                                 
E8      114.2°   89.1°  -47.4°  163.5°   18.4°  -37.8°  150.4°   E8                          
E9      -20.9°  -57.7° -178.6°  -40.6°  113.0°  158.9°  -33.8°  131.3°   E9                   
E10     160.2°  162.0°  -40.6°  116.9°  -95.1°  -60.9°  106.8°  -78.2°  140.2°   E10           
E11     126.5°  108.0°  -41.0°  175.5°  -34.1°  -41.8°  139.8°  -20.1°  137.7°   61.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2j1ra_ :    (PRO23)  (ARG149)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
 d2j1rb_ :    (PRO23)  (ARG149)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
 d4gwja_ :    (GLN54)  (ARG182)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus mitis [TaxId: 28037]
 d3le0a_ :    (GLN54)  (ARG182)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus mitis [TaxId: 28037]
 d2j1ta_ :    (PRO23)  (ARG149)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
 d2j1ua_ :    (PRO23)  (ARG149)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]
 d3leka_ :    (GLN54)  (ARG182)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus mitis [TaxId: 28037]
 d4gwia_ :    (GLN54)  (ARG182)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus mitis [TaxId: 28037]
 d3leia_ :    (GLN54)  (ARG182)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus mitis [TaxId: 28037]
 d2j22a_ :    (GLU21)  (TYR148)   [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 170187]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.18