Protein Concepts Dictionary

Tableau information

Concept source:  d2esve1  amino acid (a.a.) range (GLY3)(PRO110)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEEHEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY3)    (PHE7) E1
	    (SER9)   (ILE13) E2
	   (GLN17)   (CYS23) E3
	   (ASP30)   (MET39) E4
	   (GLU42)   (LYS51) E5
	   (LYS54)   (MET60) H6
	   (PHE65)   (ARG69) E7
	   (TYR74)   (GLN80) E8
	   (GLU83)   (VAL89) H9
	   (VAL89)   (SER95) E10
	   (ASP99)  (PRO110) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2       20.4°   E2                                                                    
E3      165.8° -167.0°   E3                                                             
E4      -57.0°  -54.8°  133.8°   E4                                                      
E5      102.9°  107.3°  -65.7°  159.9°   E5                                               
H6      -56.1°  -51.8°  135.7°   -5.4° -158.6°   H6                                        
E7      131.6°  142.6°  -34.4°  156.0°  -36.8°  161.1°   E7                                 
E8      -31.4°  -19.2°  162.8°  -36.7°  126.3°  -33.1°  161.5°   E8                          
H9     -147.8° -166.0°   27.0°  115.1°  -80.6°  119.0°  -43.8° -151.8°   H9                   
E10     142.6°  138.6°  -29.7°  158.7°  -41.1°  157.2°  -28.9°  151.2°   54.4°   E10           
E11     -45.0°  -63.3°  128.7°  -56.4°  109.5°  -60.2°  111.2°  -62.6° -103.3°  139.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3of6c1 :     (GLY3)  (PRO110)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1kgce1 :     (GLY3)  (PRO110)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
 d2esve1 :     (GLY3)  (PRO110)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
 d1od7a_ :     (TRP2)  (LYS110)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |N-terminal domain of sialoadhesin |Mouse (Mus musculus) [TaxId: 10090]
 d4ozfh1 :     (GLY3)  (PRO120)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3of6a1 :     (GLY3)  (PRO110)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1