Protein Concepts Dictionary

Tableau information

Concept source:  d1seka_  amino acid (a.a.) range (ARG196)(ASN300)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEHHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ARG196)  (SER201) E1
	  (ASP203)  (LYS207) E2
	  (PRO209)  (LYS214) E3
	  (VAL217)  (VAL222) E4
	  (LYS228)  (SER233) E5
	  (SER240)  (PRO246) E6
	  (GLY251)  (LYS260) H7
	  (LYS263)  (LEU272) H8
	  (GLU278)  (PRO282) E9
	  (PHE284)  (THR289) E10
	  (ASP291)  (ASN300) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      153.6°   E2                                                                    
E3      113.5°  -78.6°   E3                                                             
E4       25.5°  179.0° -101.8°   E4                                                      
E5     -131.3°   23.9°   80.5°  155.2°   E5                                               
E6       55.2° -146.2° -107.7°  -34.6°  167.2°   E6                                        
H7      -73.4°   90.8°   69.1°   88.5°  -69.0°  122.8°   H7                                 
H8      142.6°  -61.7°  -41.2°  119.1°  -79.0°  100.5°  106.8°   H8                          
E9      -64.1°   96.7°  161.4°   82.7°  -88.0°   86.4°  -93.2° -150.0°   E9                   
E10     -44.1°  109.5° -124.1°   69.5°  -88.5°   94.5°  -55.9° -161.9°   40.4°   E10           
H11      51.0° -136.8°  -62.8°   43.1° -123.7°   69.1°  -59.0°  -96.0°  113.6°   80.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3pb1i_ :   (ARG187)  (GLY294)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
 d1k9oi_ :   (ARG196)  (ASN300)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Alaserpin (serpin 1) |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
 d1xqga_ :   (SER183)  (GLY292)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Maspin |Human (Homo sapiens) [TaxId: 9606]
 d1iz2a_ :   (GLU206)  (GLY307)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
 d1b3ka_ :   (ARG187)  (GLY294)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
 d1qlpa_ :   (GLU206)  (GLY307)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
 d3f1sa_ :   (ASP233)  (GLY335)   [view usage] : e.1.1.0 |Serpins |Serpins |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1hp7a_ :   (GLU206)  (GLY307)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Antitrypsin, alpha-1 |Human (Homo sapiens) [TaxId: 9606]
 d9paia_ :   (ARG205)  (GLY312)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Plasminogen activator inhibitor-1 |Human (Homo sapiens) [TaxId: 9606]
 d1seka_ :   (ARG196)  (ASN300)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Serpin K |Tobacco hornworm (Manduca sexta) [TaxId: 7130]
 d1jmjb_ :   (HIS292)  (GLY394)   [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Heparin cofactor II (Hc-II, leuserpin 2) |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.1