Protein Concepts Dictionary

Tableau information

Concept source:  d3o2dl1  amino acid (a.a.) range (VAL3)(ILE105)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (VAL3)    (SER7) E1
	    (ASP9)   (SER14) E2
	   (ARG18)   (SER26) E3
	   (GLN30)   (LEU33) E4
	   (ALA34)   (PRO40) E5
	   (SER43)   (ILE48) E6
	   (ARG61)   (SER67) E7
	   (THR69)   (ILE75) E8
	   (GLN79)   (VAL85) H9
	   (VAL85)   (TYR92) E10
	   (TYR94)  (ILE105) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2       29.3°   E2                                                                    
E3      157.6°  167.0°   E3                                                             
E4      -70.4°  -86.3°  106.5°   E4                                                      
E5      -58.0°  -71.2°  121.5°   15.2°   E5                                               
E6       89.5°   78.4°  -89.6°  158.9°  147.3°   E6                                        
E7      132.2°  141.2°  -30.7°  123.6°  137.8°  -65.6°   E7                                 
E8      -38.7°  -29.3°  159.4°  -61.3°  -46.3°  106.7°  169.9°   E8                          
H9     -137.7° -166.9°   24.5°   85.0°  100.2° -107.3°  -41.7° -145.7°   H9                   
E10     150.1°  131.1°  -36.1°  139.3°  151.8°  -60.6°  -38.0°  145.2°   60.4°   E10           
E11      -9.5°  -33.7°  156.6°  -61.0°  -48.4°   99.0°  137.4°  -34.6° -133.3°  159.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2q8al1 :     (ILE2)  (ILE106)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4gq9l1 :     (GLN1)  (LEU105)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1ngwa1 :     (LEU2)  (ILE106)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 4 [TaxId: 10090]
 d4u1gc1 :     (ASP1)  (ILE110)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
 d4lria1 :     (ASP1)  (ILE111)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3o2dl1 :     (VAL3)  (ILE105)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2w9el1 :     (ILE2)  (ILE105)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4lvhc1 :     (GLN2)  (LYS110)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4webl1 :     (ILE2)  (ILE112)   [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d1bafl1 :     (GLN1)  (LEU106)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin light chain kappa variable domain, VL-kappa |Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   b.1