Protein Concepts Dictionary

Tableau information

Concept source:  d3sw5b_  amino acid (a.a.) range (VAL16)(PRO128)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (VAL16)   (VAL20) E1
	   (PRO28)   (ASP34) E2
	   (ALA39)   (ARG44) E3
	   (SER49)   (GLY54) E4
	   (ASN55)   (HIS61) E5
	   (ILE70)   (ASN76) E6
	   (GLY83)   (ASN87) E7
	   (ILE91)   (GLU97) E8
	  (GLY101)  (ILE107) E9
	  (THR115)  (ILE121) H10
	  (ASP123)  (PRO128) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      119.0°   E2                                                                    
E3      -64.9°  142.4°   E3                                                             
E4     -151.2°   55.3°  139.4°   E4                                                      
E5      128.6°  -11.7°  135.8°   51.2°   E5                                               
E6      -78.2°  139.3°  -77.8°   91.2°  141.1°   E6                                        
E7      154.5°  -85.6°  100.6°   38.8°  -76.7°   78.2°   E7                                 
E8       61.1°  -95.5°   51.4° -141.9°  -95.0°  123.9° -127.5°   E8                          
E9     -102.0°  102.3° -113.7°   57.7°  104.3°  -37.2°   63.3°  160.2°   E9                   
H10     127.5°  -91.0°   65.6°  -81.2°  -79.6°  107.3°  -52.6°   74.9° -113.0°   H10           
H11     -46.3°  156.9°  -55.0°  126.2°  168.1°   35.1°  108.2°  -90.5°   69.7°  112.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3tr4f_ :    (PHE14)  (SER126)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
 d3fq3a_ :    (VAL16)  (PRO128)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d3tr4b_ :    (PHE14)  (SER126)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
 d2bqxa_ :    (LEU15)  (SER126)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
 d3sw5a_ :    (VAL16)  (PRO128)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
 d3ld3a_ :    (VAL16)  (PRO128)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Anaplasma phagocytophilum [TaxId: 212042]
 d3fq3c_ :    (VAL16)  (PRO128)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
 d3r6ea_ :    (VAL17)  (PRO126)   [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Thermococcus thioreducens [TaxId: 277988]
 d3sw5b_ :    (VAL16)  (PRO128)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
 d3tr4d_ :    (PHE14)  (SER126)   [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.40