Protein Concepts Dictionary

Tableau information

Concept source:  d3n3ia1  amino acid (a.a.) range (ARG8)(ILE93)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ARG8)   (LYS14) E1
	   (GLY17)   (GLU21) E2
	   (GLU21)   (THR26) E3
	   (ASP30)   (GLU34) E4
	   (GLY40)   (ILE50) E5
	   (GLY52)   (GLN61) E6
	   (LEU63)   (CYS67) E7
	   (HIS69)   (GLY73) E8
	   (GLY73)   (GLY78) E9
	   (ASN83)   (ARG87) E10
	   (ARG87)   (ILE93) H11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2     -171.9°   E2                                                                    
E3      120.2°  -66.2°   E3                                                             
E4      -75.6°   99.1°  161.2°   E4                                                      
E5     -178.1°    8.1°   61.1° -102.9°   E5                                               
E6       36.9° -141.0°  -99.0°   99.8°  144.9°   E6                                        
E7      129.9°  -42.5°  -91.6°   83.9°  -50.6° -106.7°   E7                                 
E8      -84.1°  103.1°   71.2° -102.7°   95.2° -105.5°  145.5°   E8                          
E9     -108.1°   71.2°  114.5°  -47.3°  -70.0°  142.9°   88.5°  -73.0°   E9                   
E10      98.2°  -86.6°  -26.6° -172.1°   83.5°  -72.5°  -96.9°   81.1°  140.4°   E10           
H11      75.0° -101.1°  -89.1° -105.8° -106.5°   40.8°  -67.4°  138.7° -147.3°  -67.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1aaqa_ :     (ARG8)   (ILE93)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1fg6c_ :     (ARG8)   (ILE93)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3lzva_ :    (VAL11)   (GLY94)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Hiv-1 m:b_arv2/sf2 [TaxId: 11685]
 d1odya_ :     (ARG8)   (ILE93)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1g6la2 :  (ARG1008) (ILE1093)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1odxa_ :     (ARG8)   (ILE93)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3n3ia1 :     (ARG8)   (ILE93)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d2r5pa_ :     (ARG8)   (GLY94)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d3u71a_ :     (ARG8)   (LEU93)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1tcxa_ :     (ARG8)   (ILE93)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]
 d1hvca1 :    (VAL11)   (ILE93)   [view usage] : b.50.1.1 |Acid proteases |Acid proteases |Retroviral protease (retropepsin) |Human immunodeficiency virus type 1 protease |Human immunodeficiency virus type 1 [TaxId: 11676]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.50