Protein Concepts Dictionary

Tableau information

Concept source:  d1rqwa_  amino acid (a.a.) range (ALA1)(ALA127)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ALA1)    (ASN7) E1
	   (THR12)   (SER18) E2
	   (ARG29)   (SER33) E3
	   (GLU35)   (ASN40) E4
	   (LYS46)   (ASP55) E5
	   (ASP55)   (ASP59) E6
	   (GLY64)   (THR68) E7
	   (THR86)   (LEU92) E8
	   (LYS97)  (ILE102) E9
	  (PRO111)  (PRO116) E10
	  (CYS121)  (ALA127) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      157.1°   E2                                                                    
E3      -44.5°  143.9°   E3                                                             
E4      164.6°   -9.0° -145.9°   E4                                                      
E5      -16.5°  159.3°  -53.9°  160.1°   E5                                               
E6     -109.7°   76.0° -135.5°   69.7°  -93.9°   E6                                        
E7       84.7°  -90.2°   56.3°  -96.0°  100.6° -165.5°   E7                                 
E8      168.8°  -34.1°  128.1°  -26.5°  156.6°  -69.3°  -96.7°   E8                          
E9      -15.7°  141.5°  -56.0°  149.0°  -26.2°  109.6°   84.0°  175.4°   E9                   
E10     153.7°  -48.5°  113.2°  -41.7°  147.0°   75.7°  -91.9°  -15.7° -168.8°   E10           
E11     -26.6°  132.5°  -69.2°  138.4°  -30.2°   98.9°   93.7°  162.7°   13.4°  174.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2i0wa_ :     (ALA1)  (ASN128)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Solanum lycopersicum [TaxId: 4081]
 d4l2ja_ :     (ALA2)  (CYS125)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Calotropis procera [TaxId: 141467]
 d1thva_ :     (ALA1)  (ALA127)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Thaumatin |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]
 d1du5a_ :     (ALA1)  (ASP127)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Zeamatin |Maize (Zea mays) [TaxId: 4577]
 d4l5ha_ :    (ALA25)  (SER142)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Grape (Vitis vinifera) [TaxId: 29760]
 d1rqwa_ :     (ALA1)  (ALA127)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Thaumatin |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]
 d1kwna_ :     (ALA1)  (ASP129)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Thaumatin |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]
 d4jrua_ :    (ALA25)  (ASP149)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Grape (Vitis vinifera) [TaxId: 29760]
 d2blra_ :     (ALA1)  (ALA127)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]
 d1pcva_ :     (ALA1)  (CYS125)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin |Tobacco (Nicotiana tabacum) [TaxId: 4097]
 d3aoka_ :     (ALA1)  (ALA127)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]
 d1z3qa_ :     (ALA1)  (ALA122)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Musa acuminata [TaxId: 4641]
 d4dc5a_ :     (ALA1)  (ALA127)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Thaumatin |Ketemfe (Thaumatococcus daniellii) [TaxId: 4621]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.25