Protein Concepts Dictionary

Tableau information

Concept source:  d2ymua2  amino acid (a.a.) range (GLN398)(GLY506)

nSSEs in this Concept: 11

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLN398)  (SER404) E1
	  (LYS407)  (ASN413) E2
	  (LEU419)  (GLY424) E3
	  (TRP430)  (PHE434) E4
	  (GLN439)  (SER445) E5
	  (LYS448)  (ASN454) E6
	  (LEU460)  (GLY465) E7
	  (ARG471)  (PHE475) E8
	  (GLN480)  (SER486) E9
	  (LYS489)  (ASN495) E10
	  (LEU501)  (GLY506) E11

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                           
E2      162.2°   E2                                                                    
E3      -34.9°  162.6°   E3                                                             
E4      157.6°  -40.2°  123.3°   E4                                                      
E5      -18.6°  145.9°  -48.7°  167.7°   E5                                               
E6      155.8°  -31.1°  139.6°  -28.7°  163.6°   E6                                        
E7      -42.4°  138.3°  -42.0°  131.3°  -36.5°  159.6°   E7                                 
E8      149.5°  -48.2°  114.7°  -10.6°  157.2°  -39.2°  121.0°   E8                          
E9      -32.2°  130.6°  -64.9°  168.7°  -16.3°  149.7°  -47.9°  165.4°   E9                   
E10     136.3°  -57.8°  110.3°  -28.1°  154.9°  -29.5°  140.5°  -32.7°  161.8°   E10           
E11     -60.6°  107.7°  -80.9°  133.6°  -42.4°  138.5°  -42.4°  129.9°  -36.2°  161.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2b5la4 :   (SER506)  (THR630)   [view usage] : b.69.4.3 |7-bladed beta-propeller |WD40 repeat-like |DDB1-like |DDB1 |Human (Homo sapiens) [TaxId: 9606]
 d1iuba_ :   (ASN129)  (ASP253)   [view usage] : b.68.8.1 |6-bladed beta-propeller |Fucose-specific lectin |Fucose-specific lectin |Fucose-specific lectin |Orange peel mushroom (Aleuria aurantia) [TaxId: 5188]
 d1c5ka1 :   (ARG165)  (GLN283)   [view usage] : b.68.4.1 |6-bladed beta-propeller |TolB, C-terminal domain |TolB, C-terminal domain |TolB, C-terminal domain |Escherichia coli [TaxId: 562]
 d2dsoe_ :    (GLY56)  (PRO176)   [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |automated matches |Staphylococcus aureus [TaxId: 1280]
 d1qksa2 :   (LEU168)  (ARG285)   [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Paracoccus denitrificans [TaxId: 266]
 d1crza1 :   (SER191)  (THR307)   [view usage] : b.68.4.1 |6-bladed beta-propeller |TolB, C-terminal domain |TolB, C-terminal domain |TolB, C-terminal domain |Escherichia coli [TaxId: 562]
 d2bkla1 :   (LYS239)  (PRO360)   [view usage] : b.69.7.0 |7-bladed beta-propeller |Peptidase/esterase 'gauge' domain |automated matches |automated matches |Myxococcus xanthus [TaxId: 34]
 d2xzmr_ :    (PRO40)  (SER176)   [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
 d2xzmr_ :   (TYR186)  (ILE294)   [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
 d3vi3a1 :   (ASP247)  (PRO404)   [view usage] : b.69.8.0 |7-bladed beta-propeller |Integrin alpha N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4um8a1 :   (ASP238)  (GLY393)   [view usage] : b.69.8.1 |7-bladed beta-propeller |Integrin alpha N-terminal domain |Integrin alpha N-terminal domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1hzua2 :   (LEU150)  (ARG267)   [view usage] : b.70.2.1 |8-bladed beta-propeller |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase |Pseudomonas aeruginosa [TaxId: 287]
 d1ofza_ :   (ASN129)  (ASP253)   [view usage] : b.68.8.1 |6-bladed beta-propeller |Fucose-specific lectin |Fucose-specific lectin |Fucose-specific lectin |Orange peel mushroom (Aleuria aurantia) [TaxId: 5188]
 d1q7fb_ :   (ASN792)  (SER911)   [view usage] : b.68.9.1 |6-bladed beta-propeller |NHL repeat |NHL repeat |Brain tumor cg10719-pa |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d1c9ia2 :   (LYS163)  (ARG297)   [view usage] : b.69.6.1 |7-bladed beta-propeller |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2w8ba2 :   (ARG164)  (THR284)   [view usage] : b.68.4.1 |6-bladed beta-propeller |TolB, C-terminal domain |TolB, C-terminal domain |automated matches |Escherichia coli [TaxId: 562]
 d1q7fa_ :   (ASN792)  (SER911)   [view usage] : b.68.9.1 |6-bladed beta-propeller |NHL repeat |NHL repeat |Brain tumor cg10719-pa |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d2dsod_ :   (PHE148)  (PRO272)   [view usage] : b.68.6.1 |6-bladed beta-propeller |Calcium-dependent phosphotriesterase |SGL-like |automated matches |Staphylococcus aureus [TaxId: 1280]
 d1bpoa2 :   (LYS163)  (ARG297)   [view usage] : b.69.6.1 |7-bladed beta-propeller |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Clathrin heavy-chain terminal domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2cnxa_ :    (GLU58)  (HIS170)   [view usage] : b.69.4.0 |7-bladed beta-propeller |WD40 repeat-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1mdah_ :    (ARG33)  (ALA165)   [view usage] : b.69.2.1 |7-bladed beta-propeller |YVTN repeat-like/Quinoprotein amine dehydrogenase |Methylamine dehydrogenase, H-chain |Methylamine dehydrogenase, H-chain |Paracoccus denitrificans [TaxId: 266]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.68,    b.70,    b.69,     i.1