Protein Concepts Dictionary

Tableau information

Concept source:  d2bq0a_  amino acid (a.a.) range (ASP4)(SER232)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP4)   (GLU19) H1
	   (TYR21)   (GLN34) H2
	   (SER39)   (GLN69) H3
	   (GLU75)  (ASP104) H4
	  (PRO114)  (GLU133) H5
	  (ASP138)  (LYS160) H6
	  (GLN163)  (HIS166) H7
	  (HIS166)  (ASN185) H8
	  (PRO187)  (LEU205) H9
	  (TYR213)  (SER232) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2     -159.9°   H2                                                             
H3       37.2° -135.1°   H3                                                      
H4     -149.2°   30.1° -162.1°   H4                                               
H5       46.9° -131.7°   14.5° -161.7°   H5                                        
H6     -112.8°   65.0° -145.9°   37.0° -159.2°   H6                                 
H7       65.7° -121.7°   39.7° -144.9°  -25.3°  165.6°   H7                          
H8       56.8° -114.9°   20.5° -143.6°   21.6° -151.8°  -40.4°   H8                   
H9     -110.9°   73.6° -148.1°   43.5° -154.6°   18.6° -147.1° -164.9°   H9            
H10      49.6° -114.9°   26.6° -136.1°   37.6° -129.9°   61.0°   22.2° -143.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1xnfb_ :    (THR57)  (GLY208)   [view usage] : a.118.8.1 |alpha-alpha superhelix |TPR-like |Tetratricopeptide repeat (TPR) |Lipoprotein NlpI |Escherichia coli [TaxId: 562]
 d2br9a_ :    (TYR20)  (TRP231)   [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1hz4a_ :    (PHE47)  (THR226)   [view usage] : a.118.8.2 |alpha-alpha superhelix |TPR-like |Transcription factor MalT domain III |Transcription factor MalT domain III |Escherichia coli [TaxId: 562]
 d2bq0a_ :     (ASP4)  (SER232)   [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4p6zb_ :   (ASN200)  (ALA362)   [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4e2ea_ :     (ASP3)  (SER235)   [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2c74b_ :     (GLY2)  (SER235)   [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1w63a_ :    (THR19)  (PHE175)   [view usage] : i.23.1.1 |clathrin assemblies |clathrin assemblies |clathrin assemblies |AP1 clathrin adaptor core |Mouse (Mus musculus) [TaxId: 10090]
 d1w63a_ :   (ASP358)  (TYR525)   [view usage] : i.23.1.1 |clathrin assemblies |clathrin assemblies |clathrin assemblies |AP1 clathrin adaptor core |Mouse (Mus musculus) [TaxId: 10090]
 d1lrva_ :    (LEU54)  (MET155)   [view usage] : a.118.1.5 |alpha-alpha superhelix |ARM repeat |Leucine-rich repeat variant |Leucine-rich repeat variant |Azotobacter vinelandii [TaxId: 354]
 d1qsaa1 :   (CYS139)  (SER282)   [view usage] : a.118.5.1 |alpha-alpha superhelix |Bacterial muramidases |Bacterial muramidases |70 KDa soluble lytic transglycosylase (SLT70), superhelical domain |Escherichia coli [TaxId: 562]
 d2c1ja_ :     (LYS3)  (SER230)   [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1xnfa_ :    (THR57)  (GLY208)   [view usage] : a.118.8.1 |alpha-alpha superhelix |TPR-like |Tetratricopeptide repeat (TPR) |Lipoprotein NlpI |Escherichia coli [TaxId: 562]
 d2jkrb_ :   (ASN200)  (GLU364)   [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ib1a_ :     (ASP2)  (LEU216)   [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |zeta isoform |Human (Homo sapiens) [TaxId: 9606]
 d2vgla_ :    (ARG11)  (THR178)   [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |Adaptin alpha C subunit N-terminal fragment |Mouse (Mus musculus) [TaxId: 10090]
 d2vgla_ :   (VAL226)  (GLU414)   [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |Adaptin alpha C subunit N-terminal fragment |Mouse (Mus musculus) [TaxId: 10090]
 d2vgla_ :   (ASP417)  (THR588)   [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |Adaptin alpha C subunit N-terminal fragment |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.118,    i.23