Protein Concepts Dictionary

Tableau information

Concept source:  d1knca_  amino acid (a.a.) range (SER2)(SER175)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER2)   (LEU10) H1
	   (LYS15)   (SER27) H2
	   (ASP31)   (THR46) H3
	   (ASN48)   (ALA59) H4
	   (ALA59)   (LEU63) H5
	   (SER64)   (GLU92) H6
	   (GLY93)   (ARG99) H7
	  (LYS114)  (ASN128) H8
	  (SER131)  (GLY145) H9
	  (ARG148)  (SER175) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2      162.3°   H2                                                             
H3       43.9°  144.9°   H3                                                      
H4     -151.6°  -27.5° -161.1°   H4                                               
H5     -146.4°   21.1° -129.2°  -48.0°   H5                                        
H6      -47.4°  120.3°  -53.4°  140.9°  100.0°   H6                                 
H7      150.2°  -44.3°  106.5°  -56.4°  -48.9°  124.5°   H7                          
H8       11.7°  168.7°  -32.6°  160.7° -148.0°  -48.5°  138.5°   H8                   
H9     -143.7°   27.4°  172.1°   14.0°   44.2°  128.0°  -66.0° -155.2°   H9            
H10      56.7° -141.0°  -40.7°  128.2° -147.2°  -90.9°   99.7°  -48.0°  140.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1gu9h_ :     (LYS5)  (SER175)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
 d1gu9a_ :     (GLU4)  (SER175)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
 d1gu9f_ :     (ILE3)  (THR170)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
 d1lw1a_ :     (ILE3)  (LEU174)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
 d1knca_ :     (SER2)  (SER175)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
 d1kncc_ :     (ILE3)  (SER175)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
 d1lw1c_ :     (GLU4)  (LEU174)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
 d1gu9c_ :     (ILE3)  (THR170)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.152