Protein Concepts Dictionary

Tableau information

Concept source:  d3dtrm_  amino acid (a.a.) range (GLY112)(SER287)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY112)  (GLY141) H1
	  (HIS145)  (LEU160) H2
	  (ILE163)  (GLY169) H3
	  (GLY178)  (GLY194) H4
	  (ASN195)  (PRO200) H5
	  (PRO200)  (SER212) H6
	  (ALA213)  (VAL226) H7
	  (GLU234)  (ASP240) H8
	  (THR243)  (THR255) H9
	  (THR261)  (SER287) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2     -167.9°   H2                                                             
H3     -134.8°  -36.0°   H3                                                      
H4      -94.9°   73.1°   50.0°   H4                                               
H5      -37.2°  132.5°   97.7°   64.1°   H5                                        
H6       49.2° -140.2° -175.9° -133.3°  -86.4°   H6                                 
H7       34.3° -155.1°  169.0° -123.3°  -71.5°  -15.0°   H7                          
H8      -44.9°  123.3°   92.6°   50.7°  -17.3°   91.4°   77.5°   H8                   
H9     -122.5°   47.2°  -50.7°  -39.6° -101.6°  129.3°  132.0°  -85.6°   H9            
H10    -158.9°   16.6°  -25.4°   72.1°  122.4° -150.5° -164.2° -118.0°   56.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1qovm_ :   (VAL126)  (SER287)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d3g7fm_ :   (SER133)  (THR285)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |automated matches |Blastochloris viridis [TaxId: 1079]
 d3du3m_ :   (GLY112)  (VAL291)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d3duqm_ :   (GLY112)  (SER287)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d1mpsm_ :   (VAL126)  (SER287)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d4in6m_ :   (GLY112)  (SER287)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]
 d3dtrm_ :   (GLY112)  (SER287)   [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |M (medium) subunit |Rhodobacter sphaeroides [TaxId: 1063]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  f.26