Protein Concepts Dictionary

Tableau information

Concept source:  d3afib1  amino acid (a.a.) range (VAL156)(VAL304)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL156)  (THR162) H1
	  (THR162)  (ASN174) H2
	  (ALA175)  (ILE185) H3
	  (GLY190)  (PHE201) H4
	  (THR203)  (LEU217) H5
	  (ALA224)  (SER240) H6
	  (LYS244)  (GLU250) E7
	  (SER256)  (LEU267) H8
	  (ARG269)  (ARG274) E9
	  (ALA287)  (VAL304) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2     -102.2°   H2                                                             
H3     -154.2°   80.2°   H3                                                      
H4      -27.3° -129.4°  143.2°   H4                                               
H5     -115.7°  134.1°   54.4°   91.5°   H5                                        
H6      129.5°   74.1°  -26.0°  130.3°  -62.2°   H6                                 
E7      116.8°   79.9°   88.9° -114.8° -103.2° -112.1°   E7                          
H8      -75.9° -103.7°  -78.6°   73.6°   64.6°  -57.3° -166.1°   H8                   
E9      114.5°   60.0°  -89.1° -123.0° -119.0° -106.7°  -20.2° -161.4°   E9            
H10     -79.9° -105.2°   74.8°   76.1°   60.4°   54.4°  161.6°   -4.6°  160.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3a2lb_ :   (GLU151)  (ARG305)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 375]
 d1cv2a_ :   (ASP147)  (ARG294)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
 d1k5pa_ :   (ASP147)  (LEU293)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
 d2psfb_ :   (ILE159)  (GLU310)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]
 d3afia1 :   (GLN147)  (VAL304)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 224911]
 d3afif1 :   (GLN147)  (ARG305)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 224911]
 d4bata_ :   (HIS152)  (HIS295)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3sk0a_ :   (GLN150)  (HIS307)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |automated matches |Rhodococcus rhodochrous [TaxId: 1829]
 d3afib1 :   (VAL156)  (VAL304)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 224911]
 d1mj5a_ :   (ASP147)  (LEU293)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
 d4k2ad_ :   (ASP142)  (ALA297)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bradyrhizobium elkanii [TaxId: 29448]
 d1iz7a_ :   (ASP147)  (ARG294)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
 d4b9ea_ :   (HIS152)  (HIS295)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d2o2ha_ :   (VAL148)  (PRO280)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3a2nf_ :   (GLN147)  (VAL304)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bradyrhizobium japonicum [TaxId: 375]
 d2psda_ :   (ILE159)  (PRO292)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69