Protein Concepts Dictionary

Tableau information

Concept source:  d4dhje_  amino acid (a.a.) range (THR131)(ASP275)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR131)  (GLY149) H1
	  (THR152)  (ASP162) H2
	  (SER165)  (ASN184) H3
	  (TYR188)  (ILE192) H4
	  (THR197)  (PRO208) H5
	  (HIS215)  (GLY226) H6
	  (GLY226)  (ARG236) E7
	  (GLY243)  (PRO249) E8
	  (GLU258)  (LEU262) E9
	  (ASP269)  (ASP275) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2     -156.3°   H2                                                             
H3     -116.6°  -76.4°   H3                                                      
H4      119.7°  -37.2° -105.8°   H4                                               
H5       54.7° -109.2°  168.6°   76.2°   H5                                        
H6      -53.1°  149.0°   96.7° -156.4°  -83.4°   H6                                 
E7       97.9°  -59.0° -101.4°   30.2°   74.4°  150.7°   E7                          
E8     -103.7°   99.4°   70.2° -131.0° -117.3°  -50.6°  158.4°   E8                   
E9      114.1°  -42.2° -104.6°    8.4°   75.6°  158.7°  -21.7°  138.8°   E9            
E10     -30.9°  150.0°   85.9°  131.9°  -84.8°  -56.1°  102.2°  -97.1°  123.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4dhja_ :   (ASP129)  (LYS273)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d4dhji_ :   (THR131)  (SER276)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d4dhjl_ :   (THR131)  (SER276)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d4dhje_ :   (THR131)  (ASP275)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
 d4fjvc_ :    (ARG96)  (ASP232)   [view usage] : d.3.1.11 |Cysteine proteinases |Cysteine proteinases |Ubiquitin thiolesterase protein OTUB2 (Otubain-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4fjva_ :    (ARG96)  (ASP232)   [view usage] : d.3.1.11 |Cysteine proteinases |Cysteine proteinases |Ubiquitin thiolesterase protein OTUB2 (Otubain-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.3