Protein Concepts Dictionary

Tableau information

Concept source:  d3s8fa_  amino acid (a.a.) range (PHE333)(ALA504)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHHHEHHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PHE333)  (LEU339) H1
	  (ASN343)  (SER368) H2
	  (ASP372)  (HIS376) H3
	  (ALA379)  (LEU408) H4
	  (GLY410)  (SER414) E5
	  (SER414)  (ASN446) H6
	  (PRO461)  (PRO466) H7
	  (PRO466)  (LEU492) H8
	  (ARG495)  (PRO499) E9
	  (PRO499)  (ALA504) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2     -129.3°   H2                                                             
H3      -35.0° -106.8°   H3                                                      
H4       49.8° -156.4°  -81.8°   H4                                               
E5     -108.2°   93.4°   85.2° -109.4°   E5                                        
H6      130.6°   12.3°  102.4° -168.7°   81.6°   H6                                 
H7      -75.8°  150.0° -102.9°  -28.1°  -92.8°  153.5°   H7                          
H8       41.6° -142.3°  -76.5°   17.1°  124.2° -153.5°   43.7°   H8                   
E9      107.1°  -90.4° -140.2°   70.4°  130.3° -100.6°   63.6°  -68.6°   E9            
H10    -145.1°  -46.2° -149.8°  118.0°  106.7°  -54.1°  104.0° -115.4°  -47.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4g7ra_ :   (ASN343)  (ALA504)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d3s8ga_ :   (GLY331)  (ALA504)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d4g7qa_ :   (ASN343)  (ALA504)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d4g7sa_ :   (GLY331)  (ALA504)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
 d3s8fa_ :   (PHE333)  (ALA504)   [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  f.24