Protein Concepts Dictionary

Tableau information

Concept source:  d4nwia_  amino acid (a.a.) range (PRO109)(PRO257)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PRO109)  (SER129) H1
	  (GLN135)  (THR146) H2
	  (ARG152)  (GLY164) H3
	  (PRO166)  (ALA172) E4
	  (GLY175)  (ASN186) H5
	  (ASN191)  (SER196) E6
	  (ASN220)  (SER228) H7
	  (SER228)  (VAL234) H8
	  (HIS239)  (GLY244) E9
	  (SER246)  (PRO257) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2      124.0°   H2                                                             
H3      -95.6° -110.6°   H3                                                      
E4       88.2°  107.3° -130.5°   E4                                               
H5       77.7°  -55.5°  -88.6°  139.8°   H5                                        
E6      -92.4°  113.7°  119.1°  -11.8°  151.6°   E6                                 
H7      -76.3° -107.5°  -26.1°  144.8°  -67.8°  136.1°   H7                          
H8      106.5°  -49.3°   67.2° -156.6°   34.6° -159.7°  -58.2°   H8                   
E9       73.7°   93.1° -155.7°  -30.4°  109.6°  -42.1°  149.7°  136.3°   E9            
H10     -94.0° -113.6°   -3.0°  128.1°  -90.7°  116.8°  -26.6°  -70.0°  152.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4nv0a_ :   (PRO109)  (PRO257)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d2bdua1 :   (THR102)  (VAL249)   [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |Cytosolic 5'-nucleotidase III |Mouse (Mus musculus) [TaxId: 10090]
 d4fe3a_ :   (PRO127)  (ALA246)   [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d2cn1a1 :    (THR91)  (ALA235)   [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |Cytosolic 5'-nucleotidase III |Human (Homo sapiens) [TaxId: 9606]
 d4nv0b_ :   (ILE110)  (PRO257)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
 d2jgaa_ :    (THR91)  (ASP231)   [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4nwia_ :   (PRO109)  (PRO257)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108