Protein Concepts Dictionary

Tableau information

Concept source:  d4kawx_  amino acid (a.a.) range (ILE2)(GLU184)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHHEEHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ILE2)   (THR26) H1
	   (PRO34)   (GLY39) H2
	   (PRO50)   (ALA55) H3
	   (ALA55)   (GLU61) E4
	   (ARG63)   (PRO69) E5
	   (GLN74)   (SER85) H6
	   (ASN90)   (ASP94) E7
	   (ILE98)  (GLN104) E8
	  (THR106)  (GLY146) H9
	  (GLY149)  (GLU184) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2      -94.2°   H2                                                             
H3       71.1°  118.2°   H3                                                      
E4       69.4°  143.9°  -87.6°   E4                                               
E5     -100.4°  -55.5°   68.4°  156.0°   E5                                        
H6      -95.6°   94.5° -144.9°  -57.3°  146.7°   H6                                 
E7       76.2° -105.5°   13.9°  101.6°  -54.5°  158.8°   E7                          
E8       94.2°  106.4° -133.5°  -46.5°  157.3°   11.9°  147.3°   E8                   
H9      172.1°   79.3° -107.8° -118.5°   72.3°   89.5° -100.9°  -92.0°   H9            
H10      -5.4°  -99.0°   66.6°   66.9° -100.9°  -97.8°   72.5°  -95.3°  172.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1eh1a_ :     (THR2)  (GLY185)   [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Thermus thermophilus [TaxId: 274]
 d4gd1y_ :     (GLY2)  (MET184)   [view usage] : d.67.3.0 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
 d1wqfa1 :     (ILE2)  (LEU183)   [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Mycobacterium tuberculosis [TaxId: 1773]
 d4kawx_ :     (ILE2)  (GLU184)   [view usage] : d.67.3.0 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d4gfqa_ :     (MET1)  (VAL185)   [view usage] : d.67.3.0 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d1is1a_ :     (MET1)  (GLU184)   [view usage] : d.67.3.1 |RRF/tRNA synthetase additional domain-like |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Ribosome recycling factor, RRF |Vibrio parahaemolyticus [TaxId: 670]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  d.67