Protein Concepts Dictionary

Tableau information

Concept source:  d1a4la_  amino acid (a.a.) range (GLY239)(GLN352)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHEHHEHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY239)  (ASP245) H1
	  (ASP245)  (ASN256) H2
	  (ASN256)  (TRP264) E3
	  (TRP264)  (GLY270) H4
	  (ALA279)  (LYS287) H5
	  (ASN289)  (THR294) E6
	  (ASP296)  (LYS301) H7
	  (ASP305)  (GLY316) H8
	  (THR318)  (SER332) H9
	  (GLU337)  (GLN352) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2     -115.6°   H2                                                             
E3     -122.9° -110.5°   E3                                                      
H4      -83.2°  156.8°   64.6°   H4                                               
H5       69.3°  -46.4° -141.5°  149.9°   H5                                        
E6     -142.7°   99.8°  -24.3°   66.1° -144.0°   E6                                 
H7      -94.2° -124.0°  -30.0°   64.0° -128.1°  -54.1°   H7                          
H8      -32.2° -116.3°   97.0°   86.9°  -76.5°  121.0°   67.0°   H8                   
H9       99.9°   77.5° -121.9°   86.3°   86.6°  -98.8°  145.3°  132.1°   H9            
H10     -90.9°  -89.3°   57.3°  104.5°  -88.4°   77.5°  -41.5°  -59.2°  165.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1uioa_ :   (GLY239)  (GLN352)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d3iara_ :   (GLY239)  (GLY352)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Human (Homo sapiens) [TaxId: 9606]
 d1w1ie_ :   (GLY239)  (ARG352)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Cow (Bos taurus) [TaxId: 9913]
 d1fkxa_ :   (GLY239)  (GLN352)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d3rysa_ :   (GLY224)  (ALA338)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
 d1uipa_ :   (GLY239)  (GLN352)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d1krma_ :   (GLY236)  (ARG349)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Cow (Bos taurus) [TaxId: 9913]
 d1ndva_ :   (GLY239)  (TYR351)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Cow (Bos taurus) [TaxId: 9913]
 d1a4la_ :   (GLY239)  (GLN352)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d1fkwa_ :   (GLY239)  (GLN352)   [view usage] : c.1.9.1 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Adenosine/AMP deaminase |Adenosine deaminase (ADA) |Mouse (Mus musculus) [TaxId: 10090]
 d3rysb_ :   (GLY224)  (ALA338)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1