Protein Concepts Dictionary

Tableau information

Concept source:  d1s53a_  amino acid (a.a.) range (TRP10)(SER226)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHEEHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TRP10)   (VAL34) H1
	   (PRO37)   (GLY63) H2
	   (GLY65)   (PHE71) E3
	   (ASN76)   (ALA81) E4
	   (ALA81)   (LEU87) H5
	   (THR89)  (VAL101) H6
	  (GLN105)  (THR128) H7
	  (VAL130)  (ARG164) H8
	  (ALA168)  (ILE191) H9
	  (PRO200)  (SER226) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2     -158.0°   H2                                                             
E3      136.5°  -62.0°   E3                                                      
E4      -14.4°  144.1°  149.9°   E4                                               
H5       19.9°  174.6°  117.9°   34.3°   H5                                        
H6       35.9° -164.5° -110.0°   48.4°  -20.4°   H6                                 
H7     -162.1°   -4.6°   59.3° -147.9° -176.8°  160.0°   H7                          
H8       26.3° -160.4° -128.9°   34.3°   24.0°   19.5° -158.9°   H8                   
H9     -159.3°   18.6°  -47.1° -151.5° -158.1° -157.1°   18.8° -174.1°   H9            
H10      10.4° -164.0°  134.0°  -21.2°   16.7°   27.2° -166.4°   16.0° -169.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1qm8a_ :    (ASP36)  (LYS216)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d3haqa_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium salinarum [TaxId: 2242]
 d3utxa_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 64091]
 d1vgob_ :    (ARG11)  (SER231)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 29285]
 d1s53a_ :    (TRP10)  (SER226)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d2at9a_ :    (ILE11)  (ALA215)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Bacteriorhodopsin |Halobacterium salinarum [TaxId: 2242]
 d3utva_ :    (TRP10)  (PHE230)   [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 64091]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  f.13