Protein Concepts Dictionary

Tableau information

Concept source:  d3sm4b_  amino acid (a.a.) range (LYS76)(ILE217)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HHEEEHHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS76)   (LYS82) H1
	   (TYR84)   (THR95) H2
	  (PRO104)  (ARG108) E3
	  (ARG113)  (ASP119) E4
	  (GLY127)  (PRO133) E5
	  (SER136)  (GLY146) H6
	  (SER152)  (VAL164) H7
	  (ASN168)  (ARG178) E8
	  (GLY183)  (GLU193) E9
	  (GLU193)  (ILE217) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
H2      -41.8°   H2                                                             
E3       98.8°   76.6°   E3                                                      
E4       69.8°  -70.3°  140.7°   E4                                               
E5      135.8°  124.3° -119.8°   66.7°   E5                                        
H6      -56.8°  -24.0°   52.6°  -92.9° -132.2°   H6                                 
H7      -43.3°  -69.7°   75.1° -111.1°  160.1°  -66.7°   H7                          
E8      112.3°  116.2° -144.8°   47.6°  -25.3° -134.8°  139.5°   E8                   
E9      -89.0°  -81.5°   22.3° -151.9°  134.7°   59.4°  -55.9°  158.5°   E9            
H10    -121.4° -155.7°  -92.6°  125.8°   80.0°  139.6°  -86.6°   85.2°  -80.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3sm4c_ :    (ASN74)  (GLY218)   [view usage] : c.52.1.13 |Restriction endonuclease-like |Restriction endonuclease-like |lambda exonuclease |lambda exonuclease |Bacteriophage lambda [TaxId: 10710]
 d3sm4a_ :    (ASN74)  (GLY218)   [view usage] : c.52.1.13 |Restriction endonuclease-like |Restriction endonuclease-like |lambda exonuclease |lambda exonuclease |Bacteriophage lambda [TaxId: 10710]
 d1avqc_ :    (ASN74)  (GLU216)   [view usage] : c.52.1.13 |Restriction endonuclease-like |Restriction endonuclease-like |lambda exonuclease |lambda exonuclease |Bacteriophage lambda [TaxId: 10710]
 d1avqa_ :    (ASP52)  (GLY218)   [view usage] : c.52.1.13 |Restriction endonuclease-like |Restriction endonuclease-like |lambda exonuclease |lambda exonuclease |Bacteriophage lambda [TaxId: 10710]
 d3sm4b_ :    (LYS76)  (ILE217)   [view usage] : c.52.1.13 |Restriction endonuclease-like |Restriction endonuclease-like |lambda exonuclease |lambda exonuclease |Bacteriophage lambda [TaxId: 10710]
 d3slpa_ :    (ASN74)  (GLY218)   [view usage] : c.52.1.13 |Restriction endonuclease-like |Restriction endonuclease-like |lambda exonuclease |lambda exonuclease |Bacteriophage lambda [TaxId: 10710]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.52