Protein Concepts Dictionary

Tableau information

Concept source:  d1uksa4  amino acid (a.a.) range (MET115)(ASN274)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEHHHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (MET115)  (ASN129) H1
	  (ASN129)  (ASN139) E2
	  (GLY166)  (ASN173) H3
	  (THR185)  (ILE190) H4
	  (ASN204)  (LEU221) H5
	  (ASP224)  (ALA230) E6
	  (PRO235)  (LYS250) H7
	  (VAL252)  (VAL262) E8
	  (ASN263)  (PRO267) E9
	  (PRO267)  (ASN274) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2     -137.8°   E2                                                             
H3      -83.4°  -80.6°   H3                                                      
H4     -123.3°   98.5°  104.3°   H4                                               
H5      -49.3°  168.7°  110.3°   76.6°   H5                                        
E6      119.6°  -27.6°  -97.7°  114.8°  146.3°   E6                                 
H7      -67.2°  147.9°   84.2°   58.3°  -36.3°  173.1°   H7                          
E8       92.3°  -61.2° -116.0°  129.0°  113.9°  -33.6° -150.1°   E8                   
E9     -101.8°   74.5°   21.8°  -84.4° -114.6°   98.4°  -80.9°  126.1°   E9            
H10     -83.0°  123.2°   64.7°  -53.8°  -62.1°  150.8°  -25.9° -175.2°  -56.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3wmsa1 :   (ASP145)  (ASN306)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus macerans [TaxId: 44252]
 d1kcka4 :   (THR114)  (ASN274)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d4jcla1 :   (PHE115)  (ASN275)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus macerans [TaxId: 44252]
 d1cyga4 :   (THR110)  (ASN270)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus stearothermophilus [TaxId: 1422]
 d1a47a4 :   (SER115)  (SER277)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Thermoanaerobacterium thermosulfurigenes, EM1 [TaxId: 33950]
 d1v3ja4 :   (MET115)  (ASN274)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus sp. 1011, alkaliphilic [TaxId: 1410]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1