Protein Concepts Dictionary

Tableau information

Concept source:  d3wq4b_  amino acid (a.a.) range (TYR95)(LYS259)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TYR95)  (GLY106) H1
	  (ASP108)  (SER113) E2
	  (SER115)  (LEU120) H3
	  (ASN130)  (GLY148) H4
	  (GLN150)  (PHE156) E5
	  (GLN162)  (TYR168) H6
	  (SER173)  (GLY192) H7
	  (LYS196)  (MET201) E8
	  (GLU203)  (GLY215) H9
	  (ASN233)  (LYS259) H10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2      144.2°   E2                                                             
H3     -133.4°  -70.2°   H3                                                      
H4      -23.3°  165.6° -123.4°   H4                                               
E5      129.1°  -15.3°  -83.4°  150.6°   E5                                        
H6      107.3°  -39.4°   87.2° -130.5°  -28.6°   H6                                 
H7      -71.8°  143.6°   77.9°  -50.5°  158.9°  156.2°   H7                          
E8      111.5°  -39.4° -109.5°  127.1°  -28.1°  -44.3°  159.1°   E8                   
H9      129.1°  -31.8°  -96.0°  138.6°  -29.5°  -55.7°  143.5°  -20.6°   H9            
H10     -77.0°  126.4°   58.1°  -65.8°  135.8°  120.5°  -35.8°  163.5°  153.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1cbga_ :    (TYR75)  (LYS238)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Creeping white clover (Trifolium repens) [TaxId: 3899]
 d3ahyc_ :    (THR57)  (PHE211)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
 d3zjka_ :    (TYR59)  (GLY210)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Thermus thermophilus [TaxId: 274]
 d2jf6b_ :    (TYR99)  (PHE260)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rauvolfia serpentina [TaxId: 4060]
 d3wq4b_ :    (TYR95)  (LYS259)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Camellia sinensis [TaxId: 4442]
 d3ahya_ :    (THR57)  (PHE211)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
 d3wbaa_ :    (PHE72)  (TYR236)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
 d3gnoa_ :    (PHE72)  (TYR236)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
 d3cmja_ :    (TYR98)  (LEU248)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Uncultured bacterium [TaxId: 77133]
 d3ahyb_ :    (THR57)  (PHE211)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Trichoderma reesei [TaxId: 51453]
 d4gxpa_ :    (ARG67)  (THR218)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Thermotoga maritima [TaxId: 243274]
 d1e1eb_ :    (MET79)  (ASN246)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Plant beta-glucosidase (myrosinase) |Maize (Zea mays), zmglu1 [TaxId: 4577]
 d3ahxd_ :    (TYR61)  (LEU211)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Clostridium cellulovorans [TaxId: 1493]
 d3ahxa_ :    (TYR61)  (GLU212)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Clostridium cellulovorans [TaxId: 1493]
 d3w53a_ :    (TYR66)  (GLY216)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Micrococcus antarcticus [TaxId: 86171]
 d1ug6a_ :    (TYR59)  (GLY210)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Thermus thermophilus [TaxId: 274]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1