Protein Concepts Dictionary

Tableau information

Concept source:  d3mmtb_  amino acid (a.a.) range (SER0)(GLY116)

nSSEs in this Concept: 10

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER0)   (VAL13) H1
	   (GLY16)   (ALA22) E2
	   (SER25)   (GLY37) H3
	   (THR41)   (PHE53) H4
	   (SER64)   (PHE69) E5
	   (PHE69)   (GLN75) H6
	   (LEU83)   (ASP89) H7
	   (VAL93)   (ASP99) E8
	  (GLY101)  (ALA107) E9
	  (GLN110)  (GLY116) E10

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                    
E2       91.1°   E2                                                             
H3        7.5°  -87.6°   H3                                                      
H4       83.9°  170.6°   86.5°   H4                                               
E5     -100.5°  -15.9°  -98.5°  173.4°   E5                                        
H6       93.4°  100.2°  -87.5°  -72.2° -112.1°   H6                                 
H7       76.6°  167.7°   80.2°   10.8°  166.9°  -80.9°   H7                          
E8      -99.7°  -47.3°  102.0°  141.5°  -33.3° -144.6°  134.1°   E8                   
E9     -107.8°  -79.0°  113.5°  110.2°   63.9° -158.8° -104.5°   32.1°   E9            
E10     125.1°   96.2° -118.9°  -80.2°  100.9°  -31.7°  -91.0°  124.4°  127.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ex5a_ :     (THR8)  (LEU127)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
 d4tu1b_ :    (GLN25)  (GLY141)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Toxoplasma gondii [TaxId: 5811]
 d3mmtb_ :     (SER0)  (GLY116)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
 d3mbfa_ :     (ASP3)  (SER116)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
 d1ewda_ :     (THR8)  (LEU127)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
 d1ewea_ :     (THR8)  (LEU127)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1